Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1307 ATGGTACTTATTGCCTTCGAATTCAACTCCAATTTCACTTCCTCTACTTTGCATTATGCTTCCAATTCATTCTCTCATACTAGAAACTTCAATTTTACTCCGCTTATGCTTTCTATCAAGAATGATGCTTCTAATCATTCTAATTTTGTTACTCACAAGGAATTGGAATTTAAACCATCTTTTGATGAATATTTAAAGGCTATGGAGTCTGCCAAATCTGTTATTAGGGTTAAGAAAACATCCAAAAATGAGTCTGATGATGGAAATCATGTTAGAAATTTCAGAAGGGTTGGACCGAAAATTCGTAGGAAAGATGCAGCTTTCGAAGATGATGAAGCAGAAACAGGAAAATTGAATAAAGGGTTTAAGAATGAAAATGGTGAGAAAGAAAGTAATCTTGATTATAGGACAAAGAAGAATAATTGGAGTCATAGTATAGAGCCGAAATCTGATAACTGTAGTGGAAGGAAATCTGATAACCGTAGTGGAGGGATTAGCAATAAGATAATTAGGTCTAATTCGAATGGTAGCCGTGGTGGGAGTGTTGTAGAGAGGGGAGCCAATTATGGGTTATATTCTTCAAAGATGTCCAAAGAAGAGGGTTTTGGTAGAAGAGAAAGAGATCATAGTAGAAAGGGTAAAACCCTTGGTGGTGATCGTTTTGTAGACAGAAAAAAACCTATGGATCGTGGTCCTGGTAAAAGATATAGTGAAATTGAGAGTTTGACGAATAGAAATGGACGGATGAATGTCAAATCAAATGCAAGTAGTAGTTCGAATGGTGGCCGTGGTGAGAGTGTTGCAGAGAGGGAGGTCAATTATGGTTTATATTCTTCAAAGATGTCAGAAGAAGAGGGTTTTGGTAGAAGAGAAAGAGATCATAGTAGAAAGGGTGAAACCCTTGGTAGTGATAGTTTTGTAGATAGAAAAAAACCTATGGATGGTGGTCCTGGTAAAAGGTATCGTGAAATTGAGAGTTTGACGAATAGTAATGGACGGATGAATGTAAAACCGAATGGAAGTAGTAAGCGTTTTGTTAATAGGGGTTATGATTCGGACAATTTGGAGGTGGAACGAGCAGCATTTAAGAATCTTGAGGGCCCTAACAATGTTATAAGTAAGGCTCACTTTTCGCATAAAGATAGTTTTGTAGATAGAAAAAAAGCTATGGATAGTGGTCCTGGTAAAAGGTATAGTGAAATTCAGAGTTTGATTAATAGAAATGGACGGATGAATGTTAAATCGAATGGAAGTAGTAAGCGTTTTCTTAATAGGGGTTATGATTCAGACAATTTGGAGGTGGAACGAGCAGCGTTTAAGAATCTTGAGGACCCGAACAATGTTATCAGTAAGGCTCACTTTTCACATAAAGAATTGGAGGAGAGAATCCAGAAGCTAGCTAAACAGCTGAATGGTGTGGATGTCAATTCACCTGAATGGATGTTTTCTAAGATGATAAGAAGTGCAAAGCTCAAATTTAATGACTATTCTATAAGAAGGCTTATCACAATCTTAGGAAATCTCGGAAACTGGCAGCGAGTGATACAAGTCATCGAATGGCTTCAAAAGCGTGAGCGCTTCCAGTCCCATAAACCAAGGCATGTATACAATGCTGCACTTGACGCACTTGGGAAGTTGAGGAGACCTGTGGAAGCACTAAATGTATTTCATGCAATGCAGCAACAAATGTCCACATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGGCAAGCAGGGCACATGAAGCAACTCTTTGATGTGATTGATATTATGCGATCTCACCCAAAGAAGAAGTTCAGTAAAGGGGTATTTGAGAACTGGGACCCAAGGCTGGAACCTGATATTGTAGTTTATAATGCAGTCCTTAATGCATGCGTTAAGGGGAAACAGTGGGAAGGAGCATTTTGGGTTTTACAGCAGTTAAAGAAGCAAAACATAAAACCTTCGGCTGCAACATATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAATACAACTTGGTTCATGAATTTTTTAGAAAACTTCAGAAATCTTCTATTCCTAATCCATTAACATATAGAGTTCTCGTGAATACATTTTGGAAAGAGGGAAAAATTGATGAGGCTGTATCGGCTGTCCTCGAAATGGAAAGACGTGGAATTGTTGGCTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTGTGTGCAGCTGGAAGACGTCACGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTTTAGACTCTGGAAACATTCAAGACGGAGCTTACATTTTTGAAAAAATGAAGGACATATGTGCTCCGAATCTGGTTACTTACAACATAATGCTGAAAGCATACGTTGATCATGAGATGTTTCAAGAAGCTAAAGAGTTATTTGAGCAAATGTTAGAAAACACAAATCATTTGAGTCGAAAAGATGATTACAAAATGCGAGTGATACCAGATATATACACATTCAATACCATGTTAGATGCATGTGCTGCAGAAAAAAGATGGATTTATTTTGACTATGTTTACCAGAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGGCATCTTCAAATGATTTTGGAGGCTTCTAGAGCTGGAAAGGAAGAGCCATTGGAGATAACATGGAAGCACTTGGCTGACACAGATAGAATTCCACCAGTTTCTCTAATCAAGGAGAGGTTCTGTACAAAGCTTGAGAAGGATGATTATATTGTTGCTCTCAAATGTATCACCAGTAACACCCCAAAAGACTTGCAACCATTTTCGAAGTCGTCGTGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGAAGGATACACTTGTTAGACTAATGAATGCAGCTAGCAATGTAATTTCCAATACTAGTGTGCCAAATCCAGCACTTGTGTGTTTAATTCAATCATGCAAAGAATTTTGTTTTGCTACTAATCTCAGTGTAGCTGACATGGATTCAACAAACAATGTATTTGCATTAGAAAGCAAAGGGGAAGTAACCAATACTAGGTGA 3078 0.3821 MVLIAFEFNSNFTSSTLHYASNSFSHTRNFNFTPLMLSIKNDASNHSNFVTHKELEFKPSFDEYLKAMESAKSVIRVKKTSKNESDDGNHVRNFRRVGPKIRRKDAAFEDDEAETGKLNKGFKNENGEKESNLDYRTKKNNWSHSIEPKSDNCSGRKSDNRSGGISNKIIRSNSNGSRGGSVVERGANYGLYSSKMSKEEGFGRRERDHSRKGKTLGGDRFVDRKKPMDRGPGKRYSEIESLTNRNGRMNVKSNASSSSNGGRGESVAEREVNYGLYSSKMSEEEGFGRRERDHSRKGETLGSDSFVDRKKPMDGGPGKRYREIESLTNSNGRMNVKPNGSSKRFVNRGYDSDNLEVERAAFKNLEGPNNVISKAHFSHKDSFVDRKKAMDSGPGKRYSEIQSLINRNGRMNVKSNGSSKRFLNRGYDSDNLEVERAAFKNLEDPNNVISKAHFSHKELEERIQKLAKQLNGVDVNSPEWMFSKMIRSAKLKFNDYSIRRLITILGNLGNWQRVIQVIEWLQKRERFQSHKPRHVYNAALDALGKLRRPVEALNVFHAMQQQMSTYPDLVAYHSIAVTLGQAGHMKQLFDVIDIMRSHPKKKFSKGVFENWDPRLEPDIVVYNAVLNACVKGKQWEGAFWVLQQLKKQNIKPSAATYGLVMEVMFSCGKYNLVHEFFRKLQKSSIPNPLTYRVLVNTFWKEGKIDEAVSAVLEMERRGIVGSASLYYDLARCLCAAGRRHEALMQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKDICAPNLVTYNIMLKAYVDHEMFQEAKELFEQMLENTNHLSRKDDYKMRVIPDIYTFNTMLDACAAEKRWIYFDYVYQRMLYHGYHFNPKRHLQMILEASRAGKEEPLEITWKHLADTDRIPPVSLIKERFCTKLEKDDYIVALKCITSNTPKDLQPFSKSSWLNLFKENSQRFQKDTLVRLMNAASNVISNTSVPNPALVCLIQSCKEFCFATNLSVADMDSTNNVFALESKGEVTNTR* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1307 1025 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Tpr4g1307 1025 TIGRFAM PPR: pentatricopeptide repeat domain 793 821 IPR002885 -
Tpr4g1307 1025 TIGRFAM PPR: pentatricopeptide repeat domain 620 653 IPR002885 -
Tpr4g1307 1025 Pfam Pentatricopeptide repeat domain 756 804 IPR002885 -
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 157 181 - -
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 140 156 - -
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 283 320 - -
Tpr4g1307 1025 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 791 821 IPR002885 -
Tpr4g1307 1025 SUPERFAMILY TPR-like 491 820 IPR011990 GO:0005515
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 198 320 - -
Tpr4g1307 1025 Pfam PPR repeat family 617 661 IPR002885 -
Tpr4g1307 1025 Gene3D Tetratricopeptide repeat domain 605 754 IPR011990 GO:0005515
Tpr4g1307 1025 Coils Coil 449 476 - -
Tpr4g1307 1025 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 198 236 - -
Tpr4g1307 1025 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Tpr4g1307 1025 PANTHER OS01G0674700 PROTEIN 28 380 - -
Tpr4g1307 1025 PANTHER OS01G0674700 PROTEIN 397 1001 - -
Tpr4g1307 1025 Pfam PPR repeat 535 561 IPR002885 -
Tpr4g1307 1025 Pfam PPR repeat 690 719 IPR002885 -
Tpr4g1307 1025 Gene3D Tetratricopeptide repeat domain 755 889 IPR011990 GO:0005515
Tpr4g1307 1025 Gene3D Tetratricopeptide repeat domain 456 604 IPR011990 GO:0005515
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 140 182 - -
Tpr4g1307 1025 PANTHER OS01G0674700 PROTEIN 397 1001 IPR044645 GO:0009658
Tpr4g1307 1025 PANTHER OS01G0674700 PROTEIN 28 380 IPR044645 GO:0009658
Tpr4g1307 1025 MobiDBLite consensus disorder prediction 239 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1307 Tpr-Chr4 12612963 12621277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1307 617 848 Glycosyltransferase AT1G05670 23.077 1.79e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1307 - - mtr:MTR_0001s0430 1222.22