Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1293 ATGGCTGTTGAGACTTCTGATAAACCAAACTTGCCTAAAAATGTTGATGTTGATGACGATGATGATGATATGCCGATAACTTTTAAGAGAAACCCTAAGAAGAGTCCGTTGTATTCTGAAGTAAAGAAAACAAGTTCTCAAAGTCATGAGGGACAGTCAAAAAAACAGATTACTGATGGGCCTTCTGATAAACCAAACTTGCCCAAAAATGTTGACGTTGATGACGATGATGATGATATGCCAGTATCTTTTAAGAGAAACCCTAAGAAGAGTCCGTTGTATTCTGAAGTAAAGAAAACAAGTTCTCAAAGTCATGAGGGACAGTCAAACAAACAGATTACTGATGGGCCTTCTTCAAATGGTCAAAATTCTAAGCCATCACCCATGAAGCCTTCTGCAGGGATCTCGAAAACACCAAATTCGGCAGCTGTCAAGACATCCTCTAATAAGTCACCAGTAGCAAATTCAAAATCAAAGCCTCTTTTGGGACAGAAAACAAGCATTGATGTTAAGAAAGATACAAAAGTTATTGAAAACACACCTAAAGTTAAATGCGAAGATTCAGAGGATGACGATGATGATAAACCATTAAGTTCTAAGTGGAACATCAAATCTAATCATGATAACAAAGTAGTAGCCCCTGTTATGAAGACATCTGCTAAAGACTCGGATGAAGATGATGATGTCCCTCTGTCAGCAAAGTTATTACGGAATTGTAATTCGGAAACATCTACCAGGAACAATGATGACTCTGATAAGAAACCTAATTCAAAAGTTCAGAAAGATCGGCAAAATGGTTCCAGCACAAGTAATAAACAGACGAAGCCATCTACACTACCTGCTAAGAGAGAGCTAGAAAATTCTGATTCCAAGAACTCTTCAGTTAAGAAGTCAAAGGTCTCAGATTCAGCTGCTTCAATCAAAACTAAGCAAGTCACTGTCAAACCATCTGAGATTAAGACTCAGGAGGAAGATGATGACGATCTTCCCATTTCCCATAGAATTAAGAAGTCAGCTGATAAACCATCTTCCACAAAGAAAATAGTGACAAAGGTTACTAAAGTTAATAAGTCTGGTTCAACATCTTTTAAGAAGCAGACCAAGAGCAAAAAGACCAATAGCAAACAGACCAAGAACAAGTCAAAAAAGTCCGGCAGTGGCTCAGAATATTCCAAATCTACAAAACTTCTTCCCTCTGGTGATGGGCAGAAAAAATGGACTACATTGGTTCACAATGGTGTCATTTTCCCTCCTCCTTACCAGCCCCATGGAATAAAAATGCTTTATAAGGGGAAGCCTGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCGGTCATGCGAGATACAGATTACATGCAGAAAGATAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTAGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGTGACTTCACACCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAACAAATGACTACAGAAGAGAAGAAAGCTCTGAAGGAAGAAAAATTGAAGCAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAAAAGGTTGGAAATTTCAGAGTTGAACCTCCAGGATTGTTCCGTGGCCGTGGAGAGCATCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAAGGGACATCATAATTAATATTGGAGAGGATGCACCAGTTCCTGAATGTCCTATTCCTGGTGAACGCTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTATGCTATTGGAGTGACCCAATTAATCCAAAGCTATTCAAGTATGTGTTTTTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAGGCTAGGTTGTTGAAGGATTATATAGAGAACATTAGGGCAGCATACACGAAAGATTTTACAAGTAAGGATATTACAAAGCAGCAGATAGCTGTTGCTACTTATCTTATTGATAAACTGGCTTTGAGAGCTGGTAATGAGAAGGATGATGATGAAGCTGATACTGTTGGCTGCTGCACATTGAAAGTAGAGAATGTGACAAGAGAAGCCCCCAACAAATTGCAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACGGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAATTCCAAAAAGATAAAGGCCCTAGTGATGATCTCTTTGATAAGTTGGATACAAATAAATTAAATACTCATCTGAAGGAACTCATGCCTGGCTTAACAGCAAAAGTCTTCCGTACATACAATGCATCTTTCACATTAGATGATAAGTTGGCTAAGGACACTAAAGATGGCGATGTTGCAGAAAAGATGGTTGTTTATAATCATGCAAATAAAGAGGTTGCAATCATCTGTAATCATCAACGGAGTGTTTCAAAATCTCACAGTGCACAAATGACAAAATTAAATGAGAAAATCGACGAACTTCAGGCTGTTCTGAAGGAGCTGAAAGTAGATTTGGACAGGGCAAGGAAAGGAAAACCCCCTACAAAGAGTTCAGATGGAAAAAGCAAACGAAACTTAGCTCCCGAAGCGTTAGAGAAAAAGATATCTCAAACCAATGCAAAAGTTGAGAAAATGCGACGTGATATGATGACAAAAGAAGATCTTAAAACTATAGCATTAGGCACATCCAAGTTAAACTACCTTGACCCCAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCCATTGAAAAGATTTTCAACAAATCTCTGATAGCTAAATTTGCTTGGGCAATGGATGTGGACCCTGACTTCAGATTCTGA 2847 0.386 MAVETSDKPNLPKNVDVDDDDDDMPITFKRNPKKSPLYSEVKKTSSQSHEGQSKKQITDGPSDKPNLPKNVDVDDDDDDMPVSFKRNPKKSPLYSEVKKTSSQSHEGQSNKQITDGPSSNGQNSKPSPMKPSAGISKTPNSAAVKTSSNKSPVANSKSKPLLGQKTSIDVKKDTKVIENTPKVKCEDSEDDDDDKPLSSKWNIKSNHDNKVVAPVMKTSAKDSDEDDDVPLSAKLLRNCNSETSTRNNDDSDKKPNSKVQKDRQNGSSTSNKQTKPSTLPAKRELENSDSKNSSVKKSKVSDSAASIKTKQVTVKPSEIKTQEEDDDDLPISHRIKKSADKPSSTKKIVTKVTKVNKSGSTSFKKQTKSKKTNSKQTKNKSKKSGSGSEYSKSTKLLPSGDGQKKWTTLVHNGVIFPPPYQPHGIKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPRDIIINIGEDAPVPECPIPGERWKEIRHDNTVTWLCYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARLLKDYIENIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLQFNFLGKDSIKYENTVEVELPVYNAILKFQKDKGPSDDLFDKLDTNKLNTHLKELMPGLTAKVFRTYNASFTLDDKLAKDTKDGDVAEKMVVYNHANKEVAIICNHQRSVSKSHSAQMTKLNEKIDELQAVLKELKVDLDRARKGKPPTKSSDGKSKRNLAPEALEKKISQTNAKVEKMRRDMMTKEDLKTIALGTSKLNYLDPRITVAWCKRHEVPIEKIFNKSLIAKFAWAMDVDPDFRF* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1293 948 MobiDBLite consensus disorder prediction 282 296 - -
Tpr4g1293 948 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 894 912 IPR018521 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 MobiDBLite consensus disorder prediction 38 60 - -
Tpr4g1293 948 Gene3D - 768 948 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tpr4g1293 948 Gene3D DNA Topoisomerase I, domain 2 401 616 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tpr4g1293 948 PANTHER DNA TOPOISOMERASE I 159 948 - -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 845 870 - -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 345 367 - -
Tpr4g1293 948 PANTHER DNA TOPOISOMERASE I 159 948 - -
Tpr4g1293 948 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 405 616 IPR008336 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 SUPERFAMILY DNA breaking-rejoining enzymes 619 945 IPR011010 GO:0003677
Tpr4g1293 948 Gene3D - 421 504 IPR013034 GO:0003917|GO:0006265
Tpr4g1293 948 SMART topeu 545 921 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tpr4g1293 948 MobiDBLite consensus disorder prediction 379 398 - -
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 545 554 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 661 680 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 684 698 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 706 722 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 764 778 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 PRINTS Eukaryotic DNA topoisomerase I signature 901 912 IPR001631 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 MobiDBLite consensus disorder prediction 94 163 - -
Tpr4g1293 948 Pfam Eukaryotic DNA topoisomerase I, catalytic core 619 843 IPR013500 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 MobiDBLite consensus disorder prediction 246 260 - -
Tpr4g1293 948 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 403 618 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Tpr4g1293 948 MobiDBLite consensus disorder prediction 166 201 - -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 261 281 - -
Tpr4g1293 948 Gene3D Topoisomerase I; Chain A, domain 3 619 767 IPR014711 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 Coils Coil 494 522 - -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 317 344 - -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 1 398 - -
Tpr4g1293 948 CDD Topoisomer_IB_N 405 617 - -
Tpr4g1293 948 Coils Coil 817 851 - -
Tpr4g1293 948 CDD Topo_IB_C 625 818 IPR013500 GO:0003677|GO:0003917|GO:0006265
Tpr4g1293 948 Pfam C-terminal topoisomerase domain 880 948 IPR025834 -
Tpr4g1293 948 MobiDBLite consensus disorder prediction 297 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1293 Tpr-Chr4 12505127 12512736 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1293 K03163 - gmx:100799837 1262.67