Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1279 ATGAATACCCTTGTTTCAAAATCCAAACTTTCAACTCCATCATCAAGTTCTAGAAGCAGTGGAAGTAGCTGTAGCAGCAGTGAAAGCAATGAAAGCTATAACATATTAGAACTTCAAGTTCAACATATCAACTATGAACCACCACCACCAACATGTCAATCATTTTCACATCGATCATTGGCGATTCTTTCGGGACATGTTGGATCAGTTTCATGTTTAGCTTTATGTGGTGAATTCATATTGAGTGCTTCACAGGGTAAAGACATCATAGTATGGCAACAACCAGATTTAAGGTTGTTTGCCAAATTCGGACAAGGCGATGGATCTGTGAAAGCACTTGCTACCGTCGGTAACAAGGTTTTCACAGCTCATCAAGATAGTAGGATTCGTTGTTGGAAAGTGTCGAGGAGTTCTGAAAATGTTTTCAGACTCGTTGACACGCTTCCAACAACGAAGGACTATTTGGGGAGATTTATGAAACATAGTAATTATGTTCAAACTAGAAGACATCATAAGAGATTATGGATTGAACATGCTGATAGTATTTCTTGTTTGGTTGTTCATAATGGGTTGATTTATTCAGGTTCATGGGATAAGACACTTAAAGTTTGGAGTGTTTCTGATTTGAAGTGTTTGGAATCAATTAAAGCTCATGATGATGCTATTAATGGGTTGGTAGCATGTAAAGGGATTATTTATTCAGCTTCTGCAGATGGAAAAATTAAAGCTTGGGGAAAAGACGGTAAAAATTTGCATTCGTTAAAGGGTACCCTGAAAGGTCATAACGATGTTTCGTTTAATTCTGTTGTTGTTTCGGATGACGGGAAATGGGTTTATGGAGGTGGTTCAGATGGTTATGTAATGTGTTATGAAAAGATTAATGAAAATGTTGAGAATTGGAAAATGGTTTTTGAGACAAAAGCACATGAAATGGCTGTTTTGTGTATGTGTTTGATGAGTGATTATTTGTGCACAGGTTCAGCAGATAAAAGTATAGGTATTTGGAAAAGAGAATCTTTTGGTAAAATTTGTAAAGTTGGGGTTATAATTGGACATGAAGGACCTGTGAAGTGTTTGCAAGGTTCATTATCTAATAGAATTGGTGATGGATTTTTGTTGTATAGTGGAAGTCTTGATAGAAGTGTGAGAGTTTGGTGGGTTTCAAAGTATGGTAAAACACAAGTGGAAGAGAAAAAATTACAGCACTTGGTAGCACATTGA 1221 0.3653 MNTLVSKSKLSTPSSSSRSSGSSCSSSESNESYNILELQVQHINYEPPPPTCQSFSHRSLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVGNKVFTAHQDSRIRCWKVSRSSENVFRLVDTLPTTKDYLGRFMKHSNYVQTRRHHKRLWIEHADSISCLVVHNGLIYSGSWDKTLKVWSVSDLKCLESIKAHDDAINGLVACKGIIYSASADGKIKAWGKDGKNLHSLKGTLKGHNDVSFNSVVVSDDGKWVYGGGSDGYVMCYEKINENVENWKMVFETKAHEMAVLCMCLMSDYLCTGSADKSIGIWKRESFGKICKVGVIIGHEGPVKCLQGSLSNRIGDGFLLYSGSLDRSVRVWWVSKYGKTQVEEKKLQHLVAH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1279 406 PANTHER OS01G0946100 PROTEIN 4 401 - -
Tpr4g1279 406 Pfam WD domain, G-beta repeat 346 385 IPR001680 GO:0005515
Tpr4g1279 406 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Tpr4g1279 406 Pfam WD domain, G-beta repeat 177 205 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 208 245 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 168 205 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 342 386 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 299 336 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 251 291 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 96 133 IPR001680 GO:0005515
Tpr4g1279 406 SMART WD40_4 56 93 IPR001680 GO:0005515
Tpr4g1279 406 CDD WD40 59 385 - -
Tpr4g1279 406 SUPERFAMILY WD40 repeat-like 57 395 IPR036322 GO:0005515
Tpr4g1279 406 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Tpr4g1279 406 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Tpr4g1279 406 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Tpr4g1279 406 Gene3D - 6 139 IPR015943 GO:0005515
Tpr4g1279 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 214 IPR001680 GO:0005515
Tpr4g1279 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 401 IPR045182 -
Tpr4g1279 406 MobiDBLite consensus disorder prediction 1 28 - -
Tpr4g1279 406 Gene3D - 140 405 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1279 Tpr-Chr4 12366466 12368585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1279 165 390 Miscellaneous Gene Families AT5G08390 20.426 6.47e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1279 - - gmx:100775295 586.645