Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1278 ATGAGTAATTCTAAGGTTCTACTATTTGGCTCATTTACTGAAGATGAAACTAGATCATTGAGGGTAAAGAAGTCTTCTGGAAGAAATGAAAAGTCTGTCGATAAGAATCAGTTGCAATTTGGTTCTCTGAATTCTGCTAATGTTGTTGAATCAAGCAACCTGCCAAAGTCACCAAAAGCACCAAGTAATGCTGCTCTCCCCGATTCTCAGAAACTTAACGGAGTAAACAGTGTTGGTGCTAATTTGCCTAGAGTATCAGAAAGTGCTAATTTGCCTCGAGTATCAGAAAGTGCTAATTTGCCTCGAGTATCAGATAGTGCTAACCTGCCTCGAGTATCAGAAACTATAAAAGAGAATGGCAACATTACTAATTTCTCTCTCAGTACTCCCTCAAGTGTCACTATTGCAAGTAAAGTTAAAGAAAATAGTGTGTGTTCGATTCCATTAATTGATGAAAACGGTACTGCAAACCAGTTTACAAATTTGAGCCTTGATGCTTCTGAGGCTGAAAGTGTGAAGAACGGCTTCACAAATGGAAGTCATGACGATTCTTCATCGAAGTTATTTGATGAAGACTTGAAGAAGGCACCTAATGGGCATGCTGTTATTCTTATTAAGGATCTGCAGCCTCGAGGCCTTATTAACTCTGGGAATTTATGCTTTCTTAGTGCAACCGTGCAGGCTCTCTTGGCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTACGAACCCGCAACGTTCCTAAGGTTGGCTATCCCACGCTGAAAGCATTTGCCGAGTTCGTAACTCAATTTGACATGCCAAGCGGAATAAAATTAAAGAAGAAAGATACCGATTCTTTTGAGTTTGGACGGGCATTTTGCCCTGTTATGTTTGAAGATGTTCTAAAAAATTTTACTCCGGATGTGTCAAATAGCATTTCAGGAAGACCAAGGCAAGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGACGAATTACTGAAGCTTGAAGGACAGTCCTCAAGTCTTAATGGTAGCAAATCTTTTCTAGTTTCTTCTGTGGAAGAAGATGGATGGGAAACAGTGGGGCCAAAGAATAAATCTGCTGTTACAAGGACTCAAAGCTTTATTCCCTCAGAATTAAATGGTATTTTCGGTGGACAACTCCAAAGTTTGGTGAGAGCTAAAGGAAATAGTTCTGCTACTAATCAACCATATCGCTTGCTCCATCTTGACATTCACCCTGATGCTGTTCACACTATTGAGGATGCTCTGCACTTGTTTTCTGCACCAGAAACTCTTGAAGGGTACCGAGCATCGGTCACTGGAAAGGCGGGGACTGCAAAAAAGTCTATAAAGATACTGACACTTCCTAAAGTAATGATATTGCACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTGCTTAAGCCCGTGTACTTTCCTCTTGAGCTGGTATTGGGTCGTGACCTGCTTGTTTCACCATCTACCGAGGGTCGAAAATATGAACTTGTTGCTACAATTACTCATCATGGAAGGGAGCCTTCAAAAGGGCACTACACAGCTGATGCTCAGTACCCCAATGGTCAGTGGCTACGATTCGATGATGCATCTGTCTTTGCTATCGGAGCAAATAAGGTGCTGCATGATCAGGCCTATGTTCTTTTCTACAAACAGATATAA 1686 0.4134 MSNSKVLLFGSFTEDETRSLRVKKSSGRNEKSVDKNQLQFGSLNSANVVESSNLPKSPKAPSNAALPDSQKLNGVNSVGANLPRVSESANLPRVSESANLPRVSDSANLPRVSETIKENGNITNFSLSTPSSVTIASKVKENSVCSIPLIDENGTANQFTNLSLDASEAESVKNGFTNGSHDDSSSKLFDEDLKKAPNGHAVILIKDLQPRGLINSGNLCFLSATVQALLACSPFVQLLQELRTRNVPKVGYPTLKAFAEFVTQFDMPSGIKLKKKDTDSFEFGRAFCPVMFEDVLKNFTPDVSNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGSKSFLVSSVEEDGWETVGPKNKSAVTRTQSFIPSELNGIFGGQLQSLVRAKGNSSATNQPYRLLHLDIHPDAVHTIEDALHLFSAPETLEGYRASVTGKAGTAKKSIKILTLPKVMILHLMRFGYGSQGSTKLLKPVYFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGQWLRFDDASVFAIGANKVLHDQAYVLFYKQI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1278 561 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 503 521 IPR018200 GO:0004843|GO:0006511
Tpr4g1278 561 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 561 - -
Tpr4g1278 561 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 211 561 IPR028889 -
Tpr4g1278 561 Gene3D Cysteine proteinases 201 560 - -
Tpr4g1278 561 SUPERFAMILY Cysteine proteinases 208 559 IPR038765 -
Tpr4g1278 561 Pfam Ubiquitin carboxyl-terminal hydrolase 212 558 IPR001394 GO:0004843|GO:0016579
Tpr4g1278 561 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 561 - -
Tpr4g1278 561 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 212 227 IPR018200 GO:0004843|GO:0006511
Tpr4g1278 561 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1278 Tpr-Chr4 12357760 12363934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1278 208 561 Miscellaneous Gene Families AT2G24640 29.201 5.41e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1278 K11841 - gmx:100799656 772.311