Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1274 ATGGATGGTTATGAAGCTACTAGGATAGTGTTTTCAAGGATCCAAAACATGGACCCTGAAAATGCATCAAAAATCATGGGAGTACTTTTGATTCAAGATCATGGTGAGAAAGAAATGATAAGATTAGCATTTGGTCCAGAATCACTTATTCATACAGTGATTTTCAAAGCTAGAAAAGAGTTAGGACTATCTTGTTCTAATAATTCATCACCAACACCTTCAAGTTCAACTCCTCCATCACCATCACCTTTCCTTTCAAGACAAAATTCAACTTCTTCAAGGCTTAGTAATGGTTTCAATCTTCCTCCTTCTTTAACCATACCAAACCCTTCTTGGGGAGGAGCTACTATGTCTGAATATCAAAACCATGATGATTTGATTATGAGTCCTAACAATTTAGTTATAGGGTCTTCTTCAAATACTTCACCTTTTTATCCAAATGGAAGTTCAGATCCAGTTGATGATTTTCAACTTCAAGACCAACTTTCTTTCTTGAATGATGGTTCTGATTCTAGTACTCTTTTTCCTTCATATGGTTATGGAGGTAATTCTCTTCATAGAAGAAGTTGTTCTGTCAATGATGCTTGTTTAGGTTCTGAGGATCCAAATTCTGGTTTAGGATGGAAACCTTGTCTTTATTTTGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTTCTTCATGGTGATGTTGATGGTGGTTCTGCTACAATTGTTGGTTCTCCTAACAAGGTTGAGATGATGGATCAGTGTCATCATCATGAACTCTTGAGATCTAAATCTACTCATCAACAAAGATTGGCTGCTGCTTCTCAACTCATGGCCTCTAACTCTTTCCCTTACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACAAAATGATACTCAAAGGGCAGCAGCTGCAGCTCTAATGATGAGTGAGGATTTGCACAAATTTGGAAGATCAAGACTTGAAAGAACTGATTTTTCTTTGAATAGTCCTACTGGAATGATTAATCCAGCTTCTAGACAGATCTACTTGACTTTCCCAGCTGATAGTACTTTTAGAGAGGAAGATGTTTCCAATTACTTCAGTATTTATGGTCCTGTTCAAGATGTAAGGATTCCATATCAACAGAAACGTATGTTTGGCTTTGTTACCTTTGTTTATGCCGAGACGGTGAAGCTCATTTTATCTAAAGGAAACCCTCATTTTGTTTGCGATGCTCGTGTACTTGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCAGCTGCAGCAGCAGATTGATAGAGAATTTTCACCTTGTGGCACTCCTACTGGACTTGATGCTAGAGACCAATATGATCTTCAACTTGGTGGAAGAATGTTCTATAACACTCAAGACATGTTGTGGAGAAGAAAGCTAGAGGAAGCTGATTTACAGCAAGCTCTTGAGCTGCAAAGTAGGAGACTAATGTGTTTGCAACTTCTCGACATCAAGAAGCAACATCACCGCGCACTTTCCACCGGAAGTCCAATTCCTTCACCTACTCAATCACCTAACATGTTCAATCATAGTCTTGTCCTTCCTTTCCACAGAAGCTCGGAGTCCCCTGAGGAGAATGGTTCAAGTTATGTTCCAGCTAGTACTACCACTGCTTCGGTTTCTGCCGGTCAACAATCGGTCAACGGTTATATCGGCAAGGAAGTGGTGGCCAATGGAGAGAATGGAAATAGTGAAAGCAATGGAAATGGCAAACAAAGCTCAAGTCAAGATGAAGAGCTTGATTTACAAGAATGTTTGGACTTAGAGCATAATCTTCCTGATAGCCCTTTTGCTTCACCTACCAAAGCTATTGGAAATGACTTAGTAGCACCATTCTCTAATGGAACTTATGAGACCATTGATTCAGATGCATCTACTAACTCTAAATTTGGAACTAGTAAATTACATCCTACATCAGCATCTACTCTTGATATGGGCACTTTTAAATCCTTTAACTGCCAACTACCAAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTTGCCGGTACCGGTGGACCGATCGGCATTTAG 2058 0.395 MDGYEATRIVFSRIQNMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLIHTVIFKARKELGLSCSNNSSPTPSSSTPPSPSPFLSRQNSTSSRLSNGFNLPPSLTIPNPSWGGATMSEYQNHDDLIMSPNNLVIGSSSNTSPFYPNGSSDPVDDFQLQDQLSFLNDGSDSSTLFPSYGYGGNSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGDVDGGSATIVGSPNKVEMMDQCHHHELLRSKSTHQQRLAAASQLMASNSFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERTDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQLQQQIDREFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKLEEADLQQALELQSRRLMCLQLLDIKKQHHRALSTGSPIPSPTQSPNMFNHSLVLPFHRSSESPEENGSSYVPASTTTASVSAGQQSVNGYIGKEVVANGENGNSESNGNGKQSSSQDEELDLQECLDLEHNLPDSPFASPTKAIGNDLVAPFSNGTYETIDSDASTNSKFGTSKLHPTSASTLDMGTFKSFNCQLPRFSSGHGTIGMFAGTGGPIGI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1274 685 SUPERFAMILY RNA-binding domain, RBD 351 422 IPR035979 GO:0003676
Tpr4g1274 685 SMART c3hfinal6 207 231 IPR000571 GO:0046872
Tpr4g1274 685 MobiDBLite consensus disorder prediction 81 100 - -
Tpr4g1274 685 CDD RRM_AtC3H46_like 341 410 IPR034365 -
Tpr4g1274 685 Gene3D - 199 297 - -
Tpr4g1274 685 ProSiteProfiles Zinc finger C3H1-type profile. 205 232 IPR000571 GO:0046872
Tpr4g1274 685 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 673 - -
Tpr4g1274 685 MobiDBLite consensus disorder prediction 567 587 - -
Tpr4g1274 685 MobiDBLite consensus disorder prediction 526 553 - -
Tpr4g1274 685 SMART rrm1_1 340 410 IPR000504 GO:0003723
Tpr4g1274 685 MobiDBLite consensus disorder prediction 567 584 - -
Tpr4g1274 685 SUPERFAMILY CCCH zinc finger 208 230 IPR036855 GO:0046872
Tpr4g1274 685 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 395 IPR000504 GO:0003723
Tpr4g1274 685 Gene3D - 344 417 IPR012677 -
Tpr4g1274 685 MobiDBLite consensus disorder prediction 66 100 - -
Tpr4g1274 685 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 415 IPR000504 GO:0003723
Tpr4g1274 685 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 673 - -
Tpr4g1274 685 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1274 Tpr-Chr4 12296760 12301699 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1274 - - gmx:100801341 1009.98