Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1272 ATGACGATGACGAGCAGCATGAATGAATCAGAAGCTAAGCTGGACATGAGAAGAACTGCAAATTATAAACCCAACATTTGGAAAGATGATTTTCTGCAGTCTCTTGCAAGTAAATATGAAAAAGAAGAATTTGCTATGCAATTAAACAAGTGGGTGATTGAAGTGAAATGCCTTTTTGTTCAAGAGTTGGACGTTTTGCAAAAATTAGAATTGGTTGATTGGATTCATAAACTAGGCCTTGCTAGTCATTTTGAGAAGGAAATAGATGAGTTTCTTCAAACTATATTTGTCTCTGCCCAAAATTTTAACAAATTTAAGGTGAAAGATAATATGCACATGTCTACTCTATGCTTCAAGCTTCTAAGGCTGCATGGTTACCATGTTTTTCCAGCAGATATACTAAGCAACTTCTTGGATGTGAGGGACAACTCATTTGCTAGTAATGTTAAGAATATTGTGGAGCTTCTTGAGGCCTCACATTTGGGTTTAGACGGTGAACAAATCTTAGAAGAGGCCAAAAAATTTGCAATAAATTGGCTCAAAGATGCTCTCAAGTCAACTTCAAGTTCTATCAACATAGAACTATGTGATAATAACATGGTTGTTCAAAGAGTGGTCCATGCCTTGGAGCTTCCTTCTCATTGGAGAGTACCATGGTTTGATGTGAAATGGCACATGAATCAATACCAAACTATAGAACACATGGACCCCGTTTTACTTGAACTTGCTAAGTTAAACTTCAACATTATACAAGCTAAACTTCAAAAGGAGGTCAAGGAATTATCCAGGTGGTGGGAGAAACTTGGCATAAAAGAAGAGTTGCGTTTTGCACGAAATAGGTTGGTTGAAAGCTTCATGTGTGCAGCAGGGGTTGCTTTTGAGGCCAAGTATAAATCCTTGAGGAAATGGCTTACTAAAGTCATTATTTTCGTATTAGTGATTGATGATATTTATGATATCCACGCCTCATTTGAAGAACTCAACCCGTTCACAATGGCATTTCATAGATGGGATGCCAAAGAAATTGATGAACTTCCAGAGTACATGAAGATTTGCTTCAATGCACTTCAAGATATCACAAATGAAATTGCTTATGATATTGGAGGAGAAAAGAATTTCAATATGGTGTTACATTACCTAAAGAAAACGTGGATTGAGTTTTGCAAGGCCTTATACGTGGAAGCAAAGTGGTACCAAATGGGATATATTCCATCGTTGCAAGAATATTTAAACAATGCATGGATTACATCTTCAGGGCCATTAATTTTACTTCATTCATATTTTGCCACAATGTGTGAAGTAACAGATGAGATAGATGACTTTCCAGACATATATGAAGATTTGGTCTACAATGTATCTATCATCATTCGGTTGTGCAATGATCTTGGCACCGCAGTGGCTGAAAGGGAAAGGGGTGATGCTGCTTCGTCAATTATATGCTACATGAATGAAATGAATGTTTCAGAAGAAGAAGCAAGAAAACATATACAAGACATTATAAACAGTGCATGGAGAAAGATTAATGGACACTGTTCAACTCCAATTTCTTGGATGGGACCATTTTTTAATCAAGCCAAAAATGCAGCACGTGTGGCCCATACTCTTTACCTAAATGGCGATGGGTTTGGTATACAAGATCGAGATATCAAAAAACACATTTTATCACTTGTTGTTGAACCTTTCTAA 1686 0.3677 MTMTSSMNESEAKLDMRRTANYKPNIWKDDFLQSLASKYEKEEFAMQLNKWVIEVKCLFVQELDVLQKLELVDWIHKLGLASHFEKEIDEFLQTIFVSAQNFNKFKVKDNMHMSTLCFKLLRLHGYHVFPADILSNFLDVRDNSFASNVKNIVELLEASHLGLDGEQILEEAKKFAINWLKDALKSTSSSINIELCDNNMVVQRVVHALELPSHWRVPWFDVKWHMNQYQTIEHMDPVLLELAKLNFNIIQAKLQKEVKELSRWWEKLGIKEELRFARNRLVESFMCAAGVAFEAKYKSLRKWLTKVIIFVLVIDDIYDIHASFEELNPFTMAFHRWDAKEIDELPEYMKICFNALQDITNEIAYDIGGEKNFNMVLHYLKKTWIEFCKALYVEAKWYQMGYIPSLQEYLNNAWITSSGPLILLHSYFATMCEVTDEIDDFPDIYEDLVYNVSIIIRLCNDLGTAVAERERGDAASSIICYMNEMNVSEEEARKHIQDIINSAWRKINGHCSTPISWMGPFFNQAKNAARVAHTLYLNGDGFGIQDRDIKKHILSLVVEPF* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1272 561 Pfam Terpene synthase family, metal binding domain 240 506 IPR005630 GO:0000287|GO:0010333|GO:0016829
Tpr4g1272 561 PANTHER OS04G0344100 PROTEIN-RELATED 16 561 - -
Tpr4g1272 561 SUPERFAMILY Terpenoid synthases 235 561 IPR008949 -
Tpr4g1272 561 PANTHER ALPHA-FARNESENE SYNTHASE 16 561 - -
Tpr4g1272 561 SFLD Isoprenoid Synthase Type I 236 560 - -
Tpr4g1272 561 Gene3D - 63 235 IPR036965 GO:0010333|GO:0016829
Tpr4g1272 561 CDD Terpene_cyclase_plant_C1 17 560 IPR044814 GO:0010333|GO:0016102
Tpr4g1272 561 SFLD Terpene Cyclase Like 1 C Terminal Domain 236 560 IPR034741 -
Tpr4g1272 561 Pfam Terpene synthase, N-terminal domain 26 208 IPR001906 GO:0010333|GO:0016829
Tpr4g1272 561 Gene3D Farnesyl Diphosphate Synthase 24 551 IPR008949 -
Tpr4g1272 561 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 232 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1272 Tpr-Chr4 12271669 12282897 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1272 K14173 - gmx:100812119 777.319