Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1218 ATGAATGCACCTGATCGTTACGAGCGTTTCGTTGTCCCTGAAGGCACTAAAAAGGTTTCTTACGAGAGAGACACGAAGATTATCAATGCTGCATCTTTCACCATTGAAAGAGAAGATCACACTATTGGCAACATCCTTCGCATGCAGCTTCACAAAGACCCCAATGTGTTATTTGCTGGATACAAGCTTCCCCATCCTCTTCAGTACAAAATTATTATTAGGATACACACTACCAGCCAGTCTTCACCAATGCAGGCATATAATCAGTCTATCAATGATCTGGACAAGGAACTTGATACCTTGAAGAGTGGTTTTGAGGCGGAGTTGCTGAAGTTTTCAAAGGACTATTGA 351 0.4188 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1218 116 CDD RNAP_II_RPB11 13 105 IPR037685 GO:0001055|GO:0005665|GO:0006366
Tpr4g1218 116 Gene3D - 1 115 IPR036603 GO:0006351|GO:0046983
Tpr4g1218 116 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 35 66 IPR008193 GO:0003677|GO:0003899|GO:0006351
Tpr4g1218 116 SUPERFAMILY RBP11-like subunits of RNA polymerase 1 110 IPR036603 GO:0006351|GO:0046983
Tpr4g1218 116 PANTHER DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 1 112 - -
Tpr4g1218 116 Coils Coil 84 104 - -
Tpr4g1218 116 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 1 112 - -
Tpr4g1218 116 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 31 102 IPR009025 GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1218 Tpr-Chr4 11793392 11796649 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1218 K03008 - gmx:100527865 224.942