Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1182 ATGGGTTTAGAGCAAAGGTTTGTGATGATGGTAGTGATTTGTATCATTTTGGGTGCAAGTGAAAGAAGCATGGGTTTGAAGCATAATTATGAAGAAGCATTGGCAAAGAGCATATTGTTCTTTGAAGGGCAGAGGTCAGGGAAGTTACCACCAACACAAAGGATGAGTTGGAGGAAGGATTCTGCTTTTGGTGATGGTTTTCAACTTGATGATGATCGATTCTTTGATAAAGTTGACTTGGTTGGTGGTTACTATGATGCTGGTGACAATGTGAAATTCAATTTTCCAATGGCATTTTCAACAACAATGTTAGCATGGAGTGTAATAGAGTTTGGAAAATTCATGGGTCCTGAACTTAACAATGCACTAGATGCAATAGGTTGGGCCACTGATTATTTCCTAAAAGCCACAAATACCCCTGGTTTTGTTTTTGCACAAGTTGGTGACCCATTTGGTGATCATAATTGTTGGGAGAGACCTGAAGATATGGATACTCCTAGAACATCATTTTTTGTTAGTAAGGAGAATCCTGGATCTGAAGTTTCAGCTGAAATTGCAGCTGCACTTGCTGCTTCTTCTATTGCTTTTAAGAAATTTAAGCATAATGTTGGGTATTCTGAAAGGCTCCTCCAAAGGGCCATAATGGTTTTTGACTTTGCAGATAAATACAGAGGATCATACAATGACAGCCTTGGTCCTTATGTGTGCCCATTCTATTGTGATTATGGTGGCTACCAGGATGAATTGGTGTGGGGAGCAGCATGGTTACTGAAGGCTACTAAGCTACCTAATTACTGGAATTACATTAAACAAAACATTCACAATGTGAAAAATTATGGTGAATTTGGATGGGACTCAAAGGATGCTGGCATCAATGTTCTAATTTCTAAGCTTCTAGTTAATAATCCAGCTTCTAAGCCTTTTAACCTCAATGCTGACAAGTTTATATGTGCTGTGCTACCTGAATCACCCTTGGTTTCAGTCTCATACTCTCGAGGTGGACTTCTATTCAAGACTAGTGGGAGTAACTTGCAGCATGCAACATCATACTCATTTCTTTTGTTGGTTTATGCTGGATATTTGAATACTGTAAATAAAAAGATTGATTGTGGTGGTGGAGTTTTAGCTTCTTCAAAGAGACTTAAACAATTAGCAAGAAGTCAGGTAGACTACATACTTGGAAGCAACCCATTGAGTATGTCATACATGGTTGGATATGGACAAAAATTTCCCCAAAGAATACATCATCGTGCTTCATCATTACCTTCTATTGATCAACATCCTAGCAAAATCAATTGCAAAGGAGGATCCAATTATTTTGAAACCCAAAATCCAAATCCCAATTTGCTTGTAGGAGCTGTTGTTGGGGGACCTAATATCAATGATGAATATGTTGATTCTAGAGCTGATTTTGTACACTCAGAACCTACAACATATATCAATGCACCTCTTGTTGGTGTTTTGGCATATTTTAAATCACATCCATTATAA 1491 0.3796 MGLEQRFVMMVVICIILGASERSMGLKHNYEEALAKSILFFEGQRSGKLPPTQRMSWRKDSAFGDGFQLDDDRFFDKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPELNNALDAIGWATDYFLKATNTPGFVFAQVGDPFGDHNCWERPEDMDTPRTSFFVSKENPGSEVSAEIAAALAASSIAFKKFKHNVGYSERLLQRAIMVFDFADKYRGSYNDSLGPYVCPFYCDYGGYQDELVWGAAWLLKATKLPNYWNYIKQNIHNVKNYGEFGWDSKDAGINVLISKLLVNNPASKPFNLNADKFICAVLPESPLVSVSYSRGGLLFKTSGSNLQHATSYSFLLLVYAGYLNTVNKKIDCGGGVLASSKRLKQLARSQVDYILGSNPLSMSYMVGYGQKFPQRIHHRASSLPSIDQHPSKINCKGGSNYFETQNPNPNLLVGAVVGGPNINDEYVDSRADFVHSEPTTYINAPLVGVLAYFKSHPL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1182 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 464 482 IPR033126 -
Tpr4g1182 496 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
Tpr4g1182 496 PANTHER ENDO-1,4-BETA-GLUCANASE 11 495 - -
Tpr4g1182 496 SUPERFAMILY Six-hairpin glycosidases 27 492 IPR008928 GO:0005975
Tpr4g1182 496 PANTHER ENDOGLUCANASE 11 495 - -
Tpr4g1182 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Tpr4g1182 496 Gene3D - 25 495 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1182 Tpr-Chr4 11292817 11297791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1182 4 494 Glycoside Hydrolase AT1G70710 58.669 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1182 K01179 - gmx:100775752 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1182 4 11292817 11297791 Tpr4g1182 4 11292817 11297791 ECH