Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1181 ATGTCAAAATTATCATTGTTATTAACAATGATGATGGCTATAATGGCAAAATCAGTTTCACTTAAACTTAACTATGGTGATGCATTGACAAAAAGCATTTTATTTTTTGAAGGTCAAAGATCCGGAAAATTGCCACCTTCACAACGTATGAAATGGAGAAAAGACTCTGCCCTTAATGATGGACAAGATATTCATATGGATATGGTTGGTGGATACTATGATGCTGGTGACAATGTAAAATTCCATTTTCCTATGGCATTTACAACCACAATGCTAGCTTGGAGTGTGATAGAATTTGGAGATAAAATGGGATCAGATTTGCCACATGCATTGGAAGCAATCCGTTGGGGAACTGATTATTTCCTCAAAGCCACAAGAGTCCCAAATGTGGTTGTAGCACAAGTTGGAAATCCCAATAGTGATCATGGTTGTTGGGAAAGGCCAGAAGATATGGACACCTCTAGGCAAGCTTATTATTTGACACAAGATAAGCCCGGCTCAGAAGTTTCGTCTGAGATTGCGGCTGCACTTGCAGCGTCATCTATTGTATTTCGCAAAATCGATCGAAAATATTCTAAAGTGCTTCTGGCTAGCGCTAAACAGGTGTTTAACTTTGCAAATAATCACCGTGGCTCTTACAATGATTCCATTGGTGATGGAGTATGTCCCTTCTACTGTAATTTCAATGGTTACATGGATGAGTTGATTTGGGGTTCATCATGGTTGTATAAGGCTTCTAAAGATCAAACTCATTGGAACTTTATAAAATCAAATATACAATCCATAAAATTCACTTCTATTGTTAAAAATATCAATGGTTTTAAAGTTCTAACTAATGGTGGTAGTTTTGCTGAATTTGGATGGGATTCTAAGCATGCTGGCATTAATGTCCTTGTTTCTAAGTGGGTGATGAAGAATCCATCAGACCAAAGTCTTTTTGTTCCTAATGCAAACAAACTTGTATGCTCTTTGTTGCCCAATTCACCAACCAAATCAGTCACATACTCCAAAGGTGGGCTTCTGTTCAAAGTTGGATCAAGTAACCTACAACATGCAACATCACTTTCTTTTTTGTTAATTGTTTATGCTCGCTATATGCAAGCTAATAACAAAGTGGTACGATGTGGAAATGTAGTTGCTAAACCATCTGATCTCATTAATCTTGCAAAAACACAGGTTGATTATATTCTAGGAAAGAACCCATTAGGAATGTCATACATGGTAGGCTACGGAAAAAAATATCCTCAGAAGATACATCATCGTGGTTCAACTTTGCCATCATTTGACGTGCACCCAAATCGTATGGGCTGCCGTGATGGAGACAAATATTTTCAATCATCAACACCTAATATAAACGTACTAACAGGAGCAATTGTTGGAGGACCAGCGGATGATGATTCTTTTCAAGACTCACGATATAATGTTTCTCAATCAGAGCCAGCTACATATATCAATGCTCCTTTTGTTGGAGTTTTGGCTTACTTCAAATAA 1491 0.3742 MSKLSLLLTMMMAIMAKSVSLKLNYGDALTKSILFFEGQRSGKLPPSQRMKWRKDSALNDGQDIHMDMVGGYYDAGDNVKFHFPMAFTTTMLAWSVIEFGDKMGSDLPHALEAIRWGTDYFLKATRVPNVVVAQVGNPNSDHGCWERPEDMDTSRQAYYLTQDKPGSEVSSEIAAALAASSIVFRKIDRKYSKVLLASAKQVFNFANNHRGSYNDSIGDGVCPFYCNFNGYMDELIWGSSWLYKASKDQTHWNFIKSNIQSIKFTSIVKNINGFKVLTNGGSFAEFGWDSKHAGINVLVSKWVMKNPSDQSLFVPNANKLVCSLLPNSPTKSVTYSKGGLLFKVGSSNLQHATSLSFLLIVYARYMQANNKVVRCGNVVAKPSDLINLAKTQVDYILGKNPLGMSYMVGYGKKYPQKIHHRGSTLPSFDVHPNRMGCRDGDKYFQSSTPNINVLTGAIVGGPADDDSFQDSRYNVSQSEPATYINAPFVGVLAYFK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1181 496 Gene3D - 21 496 IPR012341 GO:0005975
Tpr4g1181 496 SUPERFAMILY Six-hairpin glycosidases 24 495 IPR008928 GO:0005975
Tpr4g1181 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Tpr4g1181 496 PANTHER ENDO-1,4-BETA-GLUCANASE 6 496 - -
Tpr4g1181 496 Pfam Glycosyl hydrolase family 9 25 492 IPR001701 GO:0004553|GO:0005975
Tpr4g1181 496 PANTHER ENDOGLUCANASE 6 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1181 Tpr-Chr4 11283190 11289399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1181 5 495 Glycoside Hydrolase AT1G23210 57.404 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1181 K01179 - gmx:100814370 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1181 4 11283190 11289399 Tpr4g1181 4 11283190 11289399 ECH