Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1180 ATGTCGAAATTTTCATTGTTGTTAACAATGATGATGGCTACAATGGCAAGATCAGCATCATTTGATTATGGTGATGCATTGACAAAAAGTATTTTATTTTTTGAAGGTCAAAGGTCAGGAAAATTGCCACCTTCTCAACGTATGAAATGGAGAAAAGACTCTGCACTTCATGATGGACATGATATTCATATGAATATGGTTGGTGGATACTATGATGCTGGTGACAATGTAAAATTCCATTTTCCTATGGCATTTACAACCACAATGCTAGCTTGGAGTGTGATAGAATTTGGAGATAAAATGGAATCAGATTTGCAACATGCATTGGAAGCAATCCGTTGGGGAACTGATTATTTCCTCAAAGCCACAAAAATCCCAAATATTGTTGTAGCACAAATTGGAAATCCCATCAGTGATCATGATTGTTGGGAAAGACCAGAAGATATGGACACTTCTAGACAAGCTTATTATTTGACTCAAAGGAAGCCCGGTTCAGAGGTTTCGGCTGAGATTGCGGCTGCACTTGCGGCGTCATCTATTGTATTTCGCAAAATCGATCGAAGATATTCTAAAGTGCTTCTCATTAGGGCTAAACAGGTGTTTGACTTTGCAAATAATCACCGTGGGTCTTATAATGATTCCATAGGTGCTGGGGCATGTCCCTTCTACTGTGATTTCAATGGTTACATGGATGAGTTGATTTGGGGTGCAGCATGGTTGCATAAGGCTTCTAATAATCAAAATTATTGGAACTTTGTAAAATCAAATATACTATCTTTAGAATCTTCTTCTATCGTTAGAAATGTCAATGGCTTTAAAGTTTTATCTAATGGTGGTGGTTTTGGTGAATTTGGATGGGATACTAAGAATGCTGGCATTAATGTGCTTGTTTCTCAGGGGGTGATGAACAATCCATCAAATGAGATTCCTTTTGTTCCTAATGCAAACAATCTTATATGCTCTTTGTTGCCCAATTCACCAACAAAATCAGCCACATACTCCAAAGGTGGGCTTTTATTCAAAGTTGGATCAAGTAATCTACAACATGCAACATCACTTTCTTTTTTGTTAATTGTTTATGCTCGCTATATGCAAGCTAACAACAAAGAGGTACAATGTGGAAATGTAGTTGCTAAACCATCTGATCTCATTAATCTTGCAAAAACCCAGGTTGACTATATTCTAGGAAACAACCCACTAGGTATGTCGTACATGGTAGGATATGGACAAAAATATCCTCAAAAGATACATCATCGTGGTTCAACTTTGCCATCAATTGACGTGAACCCAAATCATATAGGATGTCGTGATGGAGACAAATATTTTCAATCATCATCACCTAATATAAACGAACTAACAGGTGCAATTGTTGGAGGACCAGCAGATGATGATTCTTTTCAAGACTCACGATATAATGTTTCTCAATCAGAACCAACTACATATATCAATGCTCCTTTTGTCGGTGTTTTGGCTTATTTCAAATAA 1485 0.3704 MSKFSLLLTMMMATMARSASFDYGDALTKSILFFEGQRSGKLPPSQRMKWRKDSALHDGHDIHMNMVGGYYDAGDNVKFHFPMAFTTTMLAWSVIEFGDKMESDLQHALEAIRWGTDYFLKATKIPNIVVAQIGNPISDHDCWERPEDMDTSRQAYYLTQRKPGSEVSAEIAAALAASSIVFRKIDRRYSKVLLIRAKQVFDFANNHRGSYNDSIGAGACPFYCDFNGYMDELIWGAAWLHKASNNQNYWNFVKSNILSLESSSIVRNVNGFKVLSNGGGFGEFGWDTKNAGINVLVSQGVMNNPSNEIPFVPNANNLICSLLPNSPTKSATYSKGGLLFKVGSSNLQHATSLSFLLIVYARYMQANNKEVQCGNVVAKPSDLINLAKTQVDYILGNNPLGMSYMVGYGQKYPQKIHHRGSTLPSIDVNPNHIGCRDGDKYFQSSSPNINELTGAIVGGPADDDSFQDSRYNVSQSEPTTYINAPFVGVLAYFK* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1180 494 PANTHER ENDO-1,4-BETA-GLUCANASE 6 494 - -
Tpr4g1180 494 SUPERFAMILY Six-hairpin glycosidases 20 493 IPR008928 GO:0005975
Tpr4g1180 494 Pfam Glycosyl hydrolase family 9 23 490 IPR001701 GO:0004553|GO:0005975
Tpr4g1180 494 PANTHER ENDOGLUCANASE 6 494 - -
Tpr4g1180 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 393 419 IPR018221 -
Tpr4g1180 494 Gene3D - 18 494 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1180 Tpr-Chr4 11275767 11280677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1180 6 493 Glycoside Hydrolase AT1G70710 56.646 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1180 K01179 - gmx:100814370 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1180 4 11275767 11280677 Tpr4g1180 4 11275767 11280677 ECH