Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1141 ATGGCTGAAAATGACAACTCTAACCCTACTCCACCACCACCACCACCACATGAACAAACCGATCCATCCACCGTAACTACCTTACCGGATCCAGAACTAAAACCGGAACTCCCAGTCACCGACCAAAATGAACAACAACACCAACAGAATCCACCTTTGCAACACACCGAATCAGAAACCGATTCAAAAGATAACACATCACAAGATGTAGTTGCAGTTGAACCCGAACCCGAACCCGAACCAGTAACAGAACAACGAAATCTCCAACAGCAAAAGAAAATTCCACAGAATCTAATCTCATTCAAAGAAGAAAGCAACAGAGTAAGCGATCTCTCCGATTCCGAACGAACTTCCCTCCAACAATTCAAAAAACTCTTAACCGAAACCCTAACAGACCAGCAAGTTTCAATCTACGGCGTTCCTCTTCTCTCCGACGAACGAACGGACACAATTCTCCTCAAATTCCTCCGAGCAAGAGAATTCAAAGTCAAAGAATCACTCACAATGATTAACAATACTCTCCAATGGAGAAAAGATTTCAACATAGATTCACTTTTGGATGAAGATCTTGGTGATGATTTAGATAAAGTTGTTTTCATGCATGGTTTTTCGAGGGAAGGACATTCTGTTTGTTATAATGTTTATGGTGAGTTTCAGAATAAGGAACTTTATGATAAGACTTTTGGTAGTGAAGAAAGGAGGAATAGGTTTTTGCGTTGGAGGATTCAGTTTTTGGAAAAGAGTATTAGGAAACTTGATTTTAATCCTGGTGGTGTTAATACTGTTTTTCAAGTTAATGATCTTAAAAATTCTCCTGGTCCTGCTAAAAAGGAACTTAGGGTTGCTACTAAACAGGCTTTGCAGTTGCTTCAGGATAATTATCCTGAATTTGTTGCTAAACAGGTTTTTATCAATGTGCCGTGGTGGTATCTTGCATTCTATACCATGATCAATCCATTCCTGACTCAGAGGACAAAGAGTAAATTTGTGTTTGCAGGCCCAAACAAGTCTCCTGATACGCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAGTTCAGTATGGTGGCCTGAGTGTCGATTTTTGTGATTGCAACCCGGATTTCAGCATTAATGATGCCACCACAGAAATTCCTGTAAAGCCGACCACAAAGCAAACTGTGGAAATTGCTATTTATGAGAAATGCATTATTGTCTGGGAATTGCGTGTTGTAGGCTGGGAGGTTAGTTATAGCGCTGAATTCAAACCCGATGCTAAGGATGCATATGCTGTCATTATACAGAAGGCTACAAAGATGTCCCCAACCGATGAACCAGTGGTTTCCAATAGCTTTAAAGTTAGCGAACTGGGAAAGTTGTTCCTCACTGTTGACAATCCCACCTTGAAAAAGAAGAGGCTTCTTTACCGGTTCAAGATCAAACCCTACACTGAGTGA 1434 0.4073 MAENDNSNPTPPPPPPHEQTDPSTVTTLPDPELKPELPVTDQNEQQHQQNPPLQHTESETDSKDNTSQDVVAVEPEPEPEPVTEQRNLQQQKKIPQNLISFKEESNRVSDLSDSERTSLQQFKKLLTETLTDQQVSIYGVPLLSDERTDTILLKFLRAREFKVKESLTMINNTLQWRKDFNIDSLLDEDLGDDLDKVVFMHGFSREGHSVCYNVYGEFQNKELYDKTFGSEERRNRFLRWRIQFLEKSIRKLDFNPGGVNTVFQVNDLKNSPGPAKKELRVATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPNKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFSINDATTEIPVKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDAKDAYAVIIQKATKMSPTDEPVVSNSFKVSELGKLFLTVDNPTLKKKRLLYRFKIKPYTE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1141 477 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 187 356 IPR001251 -
Tpr4g1141 477 CDD SEC14 196 357 IPR001251 -
Tpr4g1141 477 SMART CRAL_TRIO_N_2 148 173 IPR011074 -
Tpr4g1141 477 SMART sec14_4 192 359 IPR001251 -
Tpr4g1141 477 PANTHER PATELLIN-3 130 476 - -
Tpr4g1141 477 PANTHER PATELLIN-3 31 134 - -
Tpr4g1141 477 MobiDBLite consensus disorder prediction 1 97 - -
Tpr4g1141 477 Pfam CRAL/TRIO, N-terminal domain 119 172 IPR011074 -
Tpr4g1141 477 SUPERFAMILY CRAL/TRIO N-terminal domain 105 189 IPR036273 -
Tpr4g1141 477 Gene3D - 104 393 IPR036865 -
Tpr4g1141 477 Pfam CRAL/TRIO domain 197 356 IPR001251 -
Tpr4g1141 477 PANTHER PATELLIN-1 31 134 IPR044834 GO:0008289
Tpr4g1141 477 PANTHER PATELLIN-1 130 476 IPR044834 GO:0008289
Tpr4g1141 477 MobiDBLite consensus disorder prediction 83 97 - -
Tpr4g1141 477 SUPERFAMILY CRAL/TRIO domain 197 365 IPR036865 -
Tpr4g1141 477 PRINTS Cellular retinaldehyde-binding protein signature 151 173 - -
Tpr4g1141 477 PRINTS Cellular retinaldehyde-binding protein signature 314 333 - -
Tpr4g1141 477 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1141 Tpr-Chr4 10897418 10900347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1141 152 351 Acyl Lipid Metabolism Gene Families AT1G55840 28.972 4.46e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1141 - - gmx:100804006 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1141 4 10897418 10900347 Tpr4g1141 4 10897418 10900347 ECH