Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1139 ATGGAAGAATCAAACGATGTTTTGTTGGAAGCTGAATTAGCTCTTGTAGACGGCTCCGTTGACTACACAGGACAACCTGCAATTAGATCCAAATCTGGTTATTGGAGATCAGCCTGGTTTATCATAGGTGTGGAAGTGGCAGAGAGGGTATCATATTATGGAATTCAAGGGAACTTGATATCATATTTGACAGGGCCACTCAAACAAAGTACTGCAACAGCTGCTGAGAATGTGAATATATGGGCTGGAACTGCTTCTCTTCTTCCTCTATTTGGTGCTTTCATTGCTGATTCTTTTCTTGGACGTTACCACACTATCATACTTGCTTCTCTCATCTATATCTTGGGACTAGGATTGTTAACATTATCAGCTATGCTTCCTTCCATCACCAAATCTAAATGTCAATTAGACAGTACATTCATATTCTGCTCCCAACATTCACAAGTAATCTTATTCTTCATCTCACTCTATCTAGTAGCCATTGGACAAAGTGGACATAAACCTTGTGTTCAAGCTTTCGGGGCAGATCAATTCGACGAACAACATCCTAAGGAGCAGAGAGCTAGAAGCTCATTCTTTAATTGGTGGTATTTTACCATGATTGCAGGTTGCACCGCAACACTTTCGATCTTGAACTATATACAAGATAACTATAGTTGGGTTCTTGGATTTGGTATCCCTTGTGTTGTCATGATCATTGCTTTGACTGTGTTCTTGCTTGGAACAACGACATATAGGTTTAACATTCGGGATAATGGCGAGAGTTCATTTCTTAGAATTGGTCGCGTATTCATTGTAGCTGTAAGAAATTGGCAAAAAACGTTATCAAGCAACACTATTGAAGAGGAATGTGATGGAACACTTCGTCGTCAAAGTTCTGAACAATTCAACTTCCTCAACAAGGCATTGCTAACATCAAAGGGATCCAAAGATGGTAAAACTTGTAGCCTTAGTGAGGTGGAAGAAGCAAAGGCAGTACTAAGACTAGTTCCAATTTGGGCTACAACTTTGGTTTATGGTATTGTGTTTGCTCAAGTTTTTACATTCTTCATTAAACAAGGAAAATCTATGGAGAGAACAATATTTCCTGGTTTTGACATACCCCCCGCTTCTCTTCAATCGATTAACAGTCTCGCCATTGTTCTCGTAAGCCCCATCTATGACCGCATATTCGTGCCAGTAACAAGATCTTTCACTGGGAAACCCTCAGGCATCACAATGCTTCAAAGAATCGGCACTGGAATTTTTCTATCCATTTTCACAGTAGTAGTTGCAGCCCTTGTTGAGATTAAAAGACTAAAAACAGCACAAGAGTATGAACTTGTTCATGATCCCAATGCAATTGTTCCAATGAGTATATGGTGGTTGATTCCTCAATACTTTTTGTTTGGAGTTTCTGAGGTTTTTACTATGGTTGGTCTTCAAGAGTTTTTCTATGATCAGGTCCCAAATGAACTAAGAAGCATGGGACTTGCACTCTACTTGAGTATTGTTGGTGTTGGAAGCTTTCTAAGTGGCTTTCTCATTTCAATGATAGAAAATATTACTGGCAAAGATGGACATGAAAGTTGGTTTTGTGACAATATCAATAAGGCACATCTTGATTACTTTTATTGGCTACTTTCTGGATTAAGTGTGGTGGGGTTTACTTTGTTCATTTACTTTGCAAAATCTTATGTTTATAATCGCAAAGGTATTATCACACAAGGATAG 1713 0.3876 MEESNDVLLEAELALVDGSVDYTGQPAIRSKSGYWRSAWFIIGVEVAERVSYYGIQGNLISYLTGPLKQSTATAAENVNIWAGTASLLPLFGAFIADSFLGRYHTIILASLIYILGLGLLTLSAMLPSITKSKCQLDSTFIFCSQHSQVILFFISLYLVAIGQSGHKPCVQAFGADQFDEQHPKEQRARSSFFNWWYFTMIAGCTATLSILNYIQDNYSWVLGFGIPCVVMIIALTVFLLGTTTYRFNIRDNGESSFLRIGRVFIVAVRNWQKTLSSNTIEEECDGTLRRQSSEQFNFLNKALLTSKGSKDGKTCSLSEVEEAKAVLRLVPIWATTLVYGIVFAQVFTFFIKQGKSMERTIFPGFDIPPASLQSINSLAIVLVSPIYDRIFVPVTRSFTGKPSGITMLQRIGTGIFLSIFTVVVAALVEIKRLKTAQEYELVHDPNAIVPMSIWWLIPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIVGVGSFLSGFLISMIENITGKDGHESWFCDNINKAHLDYFYWLLSGLSVVGFTLFIYFAKSYVYNRKGIITQG* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1139 570 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 92 116 IPR018456 GO:0006857|GO:0016020|GO:0022857
Tpr4g1139 570 Pfam POT family 103 524 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tpr4g1139 570 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT-LIKE PROTEIN 19 565 - -
Tpr4g1139 570 CDD MFS_NPF5 35 561 IPR044739 GO:0042937|GO:0042938|GO:0071916
Tpr4g1139 570 Gene3D MFS general substrate transporter like domains 9 566 IPR036259 -
Tpr4g1139 570 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 565 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tpr4g1139 570 SUPERFAMILY MFS general substrate transporter 27 557 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1139 Tpr-Chr4 10861612 10876108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1139 10 563 Organic Solute Cotransporters AT1G22540 63.357 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1139 K14638 - gmx:100776720 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1139 4 10861612 10876108 Tpr4g1139 4 10861612 10876108 ECH