Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1131 ATGGAGGACATTGAAGATTTGCTCATCGGAACCGGCGCCGGAACTCCACCGGGCTTTCGTTCTCCGTTAACCTCCGCTACCGTTGGCTTTGAAACGAAGAAGAATCAACGCTCTTCACTATTATCTTCACCTTCCCCTTCAATCCCCGGCACTCAGACTATTTTCATAAAGACATTTGGATGTTCTCATAATCAGAGTGATAGTGAATATATGGCTGGTCAGCTTTCAGCTTTTGGTTACTCATTGAGTGATAATCCTGATGAAGCAGATCTATGGCTCATAAACACTTGCACAGTAAAATCCCCGAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGTAGTCGCGATACAAAAGAGCTGGAAGGGATCAGCATTGTAGGAGTCCAGCAAATTGACCGTGTTGTTGAAGTTGTAGAGGAAACTTTAAAAGGTCACGAAGTGCGGCTTTTGACCCGTAAGACATTGCCAGCACTCGACCTTCCAAAGGTGAGAAAGAACAAATTTGTTGAGATTCTTCCAATTAATGTCGGATGTTTAGGTGCTTGCACTTATTGCAAGACAAAACATGCTCGGGGTCACCTTGGGAGTTACACAATAGATAGCCTTGTAAGTACTGTAGTAGTGAGCTATGTTGTATACTCTCACTCCCTCTCACACACATCTGCATACACACTATTACATTTTCCTCACCTCTCTCTCTCTCTCTCTCACACACACACACACACACATGCGTGCGCGCGTGCATCTACTATTTTATTTTCCTCATCTCACACACATGCACACATTATTTCACTTTCCATACTTCTATTAATCCTCTCTGTGCAGGTTGGGCGTGTAAAGTCTGTGGTATCTGATGGAGTTAAAGAAATATGGCTGAGTAGTGAAGATACCGGAGCATATGGTCGCGACATTGGTGTCAATCTTCCAACTTTATTAAATGCCTTAGTAGCAGAATTACCAGCTGATGCAAGCACTATGCTGCGTATTGGAATGACCAATCCACCTTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGGTTCTACGGCATCCATGTGTTTACACCTTTTTGCATGTGCCAGTTCAGTCTGGAAGTGATGCTATTTTGACTGCAATGAATCGAGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACCTTAACTGAGCTTGTACCAGGGATGCAGATTGCCACTGATATAATATGTGGATTTCCAGGTGAAACCGATGAAGATTTTGAGCAAACTGTCAACCTTATAAGAGAATACAAATTCTCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGCACACCTGCGGCTAGGATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGAAGAAGCCGTGAACTGACGAATGTCTTTGAAGCCTTCACGCCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTGCACTTGGTTGGTCATACAAAAGGATATATACAAGTTCTCGTAATTGCTCCAGACAATATGCTTGGAAGTTCAGCTCTGGCCAAGATAACATCGGTCGGAAGATGGTCGGTTTTTGGGGAAATAATTGAGACAATAAATCATGCAAGTGACAATAAAGCTTTGAACAAGCAGGTTCCTAATCAGCATATGTCTTCTCTCTGTTGTAACCAAACCAACACTTGTGTAACCTCGGAAGTGCCAGAATCTTGTGCTTGTGGAAATGTTGACAGCTGCTGCAGTCAGAGTACTCTCGAGACGGCCGATAATTCAAGAGATACTGTAGTGCTGCCACAGAAGCAAAACAGCAAAAATTTGTTTGGATGGATACTAAGGAAGCGAAAGAATCTGCACAAAAGGGTTGAAAGTGAACTTGCCTCAGGATCTGATATAAAGCAAGAAAAGAGCATGAAAAAGTGGGACTTTGTTGATAAGGCTCTTTTGGGTGGAATCTCTATCAGCATCTTGACAATTATTGCTTTATTAGTTTATCTTAGGGTTAGTGTTATTTGGTCCTAA 2073 0.4216 MEDIEDLLIGTGAGTPPGFRSPLTSATVGFETKKNQRSSLLSSPSPSIPGTQTIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDEADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRDTKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVSTVVVSYVVYSHSLSHTSAYTLLHFPHLSLSLSHTHTHTHACARASTILFSSSHTHAHIISLSILLLILSVQVGRVKSVVSDGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPFILEHLKEIAEVLRHPCVYTFLHVPVQSGSDAILTAMNREYTVSEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFEQTVNLIREYKFSQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVIAPDNMLGSSALAKITSVGRWSVFGEIIETINHASDNKALNKQVPNQHMSSLCCNQTNTCVTSEVPESCACGNVDSCCSQSTLETADNSRDTVVLPQKQNSKNLFGWILRKRKNLHKRVESELASGSDIKQEKSMKKWDFVDKALLGGISISILTIIALLVYLRVSVIWS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1131 690 Gene3D - 53 172 IPR038135 -
Tpr4g1131 690 Gene3D tm_1862 like domain 290 486 IPR023404 -
Tpr4g1131 690 SMART MiaB 185 482 IPR006638 GO:0003824|GO:0051536
Tpr4g1131 690 Gene3D - 187 234 - -
Tpr4g1131 690 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 52 160 IPR013848 GO:0035596|GO:0051539
Tpr4g1131 690 ProSiteProfiles TRAM domain profile. 487 549 IPR002792 -
Tpr4g1131 690 Pfam Uncharacterized protein family UPF0004 54 133 IPR013848 GO:0035596|GO:0051539
Tpr4g1131 690 ProSiteProfiles Radical SAM core domain profile. 181 487 IPR007197 GO:0003824|GO:0051536
Tpr4g1131 690 PANTHER RADICAL SAM PROTEINS 1 223 - -
Tpr4g1131 690 PANTHER RADICAL SAM PROTEINS 293 579 - -
Tpr4g1131 690 Pfam Radical SAM superfamily 296 437 IPR007197 GO:0003824|GO:0051536
Tpr4g1131 690 ProSitePatterns Methylthiotransferase radical SAM domain signature. 189 209 IPR020612 GO:0051539
Tpr4g1131 690 SUPERFAMILY Radical SAM enzymes 296 482 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1131 K15865 - gmx:100798865 932.939