Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1120 ATGAAAGAAAGTAACGGTAAGAACAGTATCGAAAAATCAGATCAAGATCAAGATCTAGGGTTATACTTTTTGGAATTGTGTAGTAGAAAAGTGAAAGAAGAGTTAAAAGATTACAACGGTGATGGTGATGGTGATGATGATGAAGAGAAAGAGGAATCACCGAGCGAGCTCAATACTATAAATAGTTCAGGTGGTTTTGTTGTTGTTGCTACGGATAAACTTTCAGTGAAGTATACAAGTGTTAATCTTCATGGTCATGATGTTGGTGTTATTCAAGCTAATAAATTTGCTCCGATGAAAAGGCTTGTTTATTATTTTGAGATTTTTGTTAAAGATGCTGGTGTTAAAGGTCAAGTTTCTATTGGGTTTACGTCTGAGAATTTCAAGATGAGAAGACAACCTGGGTGGGAGGCTAATAGCTGTGGATATCATGGGGATGATGGTTTCCTTTATCGTGGACATGGCAAAGGAGAAGCTTTTGGTCCAACCTATACCACTGGTGATATAGTTGGTGCTGGAATTAACTATGCTTCTCAGGAATTTTTTTTCACTAAAAATGGGCAAGTTGTTGGCACAGTTTACAAAGACATGCAGGGTCCCCTTTATCCAACCGTTGCTGTTCATAGCCAGAATGAAGAGGTACATGTCAACTTCGGGCAGAAACCATTTACCTTTGACCTAAAGGAATTTGAAGCTCAAGAAAGAATGAAGCAGCAAGTGAAAATAGAGGAAATACCTGTGGCACCAAATGCCAGTTATGGAATTGTCCGTTCCTACCTGCTACACTATGGCTATGAAGATACATTGAATGCATTTGATGTGGCTAGTAAGAGTACAGTTCCTCCTATAAATATAGTGCAAGAAAATGGTATTGATGACCAGGAAACAACGTATGCATTGAATCACAGGAAGACTCTACGGCAGCTAATCAGGGATGGGGAGATTGATGTTGCATTTGGTAAATTGCGTGAATGGTATCCCCAGATTACTGAGGACAATACATCAGCTATGTGTTTTCTGCTTCATTGCCAAAAATTCATTGAACTAGTTCGGGTTGGAGAACTGAAGGAGGCTGTCACATATGGAAGAATAGAATTGTCACGGTTTTTTGGGTCGCCAGTCTTTGAGGAGTTAGTTCAGGAGTGCGTTGCTTTACTGGCCTACGAACAACCATTAGAATCTGCCGTAGGTTATCTCCTAAAAGACTCGCGGCGTGAAGTTGTAGCAGACTCGGTAAATGCAATGATATTGTCTACAAATCCCAACCTGAAAGAAACGAAAAATTGCTTACACTCTAATCTCGAGAGGTTACTAAGACAGCTCACTGCGTCTTGCTTCGAGAGACGATCATTGAGTGGAGATCAGGGAGAAGCTTTTCAACTTCAAAGAGTGCTTAACGGTGGTAAAAAGAGCTAA 1416 0.4018 MKESNGKNSIEKSDQDQDLGLYFLELCSRKVKEELKDYNGDGDGDDDEEKEESPSELNTINSSGGFVVVATDKLSVKYTSVNLHGHDVGVIQANKFAPMKRLVYYFEIFVKDAGVKGQVSIGFTSENFKMRRQPGWEANSCGYHGDDGFLYRGHGKGEAFGPTYTTGDIVGAGINYASQEFFFTKNGQVVGTVYKDMQGPLYPTVAVHSQNEEVHVNFGQKPFTFDLKEFEAQERMKQQVKIEEIPVAPNASYGIVRSYLLHYGYEDTLNAFDVASKSTVPPINIVQENGIDDQETTYALNHRKTLRQLIRDGEIDVAFGKLREWYPQITEDNTSAMCFLLHCQKFIELVRVGELKEAVTYGRIELSRFFGSPVFEELVQECVALLAYEQPLESAVGYLLKDSRREVVADSVNAMILSTNPNLKETKNCLHSNLERLLRQLTASCFERRSLSGDQGEAFQLQRVLNGGKKS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1120 471 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 299 357 IPR006595 -
Tpr4g1120 471 ProSiteProfiles LIS1 homology (LisH) motif profile. 248 280 IPR006594 GO:0005515
Tpr4g1120 471 CDD SPRY_RanBP_like 89 219 IPR044736 -
Tpr4g1120 471 Pfam SPRY domain 104 220 IPR003877 GO:0005515
Tpr4g1120 471 SUPERFAMILY Concanavalin A-like lectins/glucanases 61 225 IPR013320 -
Tpr4g1120 471 Pfam CTLH/CRA C-terminal to LisH motif domain 301 442 IPR024964 -
Tpr4g1120 471 PANTHER RAN BINDING PROTEIN 9-RELATED 44 469 - -
Tpr4g1120 471 SMART ctlh 299 357 IPR006595 -
Tpr4g1120 471 SMART SPRY_3 101 222 IPR003877 GO:0005515
Tpr4g1120 471 Gene3D - 32 239 IPR043136 -
Tpr4g1120 471 SMART toby_final6 353 454 IPR013144 -
Tpr4g1120 471 PANTHER RAN-BINDING PROTEIN M HOMOLOG 44 469 - -
Tpr4g1120 471 MobiDBLite consensus disorder prediction 37 57 - -
Tpr4g1120 471 ProSiteProfiles B30.2/SPRY domain profile. 35 223 IPR001870 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1120 K23334 - gmx:100805319 766.148