Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0585 ATGGCCGGTGGTGGTGGTGGTGGTGGTGGTAGTTCACTGTCAGGGTTGCAAGATCATGTGAAGTTAGCAAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTATTGCACAAATCAACAGGCATCTAAACAGTGTTGATGACCCTTTGATTCGTGCAAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTTAAACAACTAGATGCAGATAAAAGAGCGTTTAAAGATAACCCTATTGGAAGACGTCCTCCGTCGCCTCCAATTTCTACTAAATCGTCGTTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGATGATCCTGATGTGTGGAGGCCACCTAGTAGAGATAATAGAAGACCCGCAAGGGGTGGTCAAGTGGGTAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGCCAGCTGCAGCTGGCCGTGGTGCAAAGGCTGGTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGGACATCAACTCCCGTAAAAAAAGGCGGTGTTTCTGGAAAGTCTAGCAAGACAGACACAACTAATGGTGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAAACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCGAAATGGCGTGGAGAGAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATCGATTCGCTATGCAATGCTAGGGGGGCTTCTGGAGAGCATGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACAGTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTTCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAATTGATCCGGATAAATTTGAAAACCGTTGAGGTGGCCACTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGATGATTTGACAAACGTCTGCCGCGATGCTTCCTTAAACGGAATGAGGCGGAAGATAGCAGGAAAGACTCGCGATGAAATCAAGAATATGTCTAAGGATGAAATTTCAAAAGATCCTGTTGCTATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCCGGCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA 1587 0.4386 MAGGGGGGGGSSLSGLQDHVKLARDYALEGLYDTSIIFFDGAIAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDNRRPARGGQVGNRISQQDSKWARGATTKPAAAGRGAKAGGGVKSKVNSGARTSTPVKKGGVSGKSSKTDTTNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSPADIERHEKWFHEFGSA* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0585 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 525 IPR027417 -
Tpr4g0585 528 Gene3D - 11 87 - -
Tpr4g0585 528 CDD AAA 274 417 - -
Tpr4g0585 528 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 14 528 IPR028596 GO:0008017|GO:0008568|GO:0051013
Tpr4g0585 528 Gene3D - 238 518 IPR027417 -
Tpr4g0585 528 Pfam Vps4 C terminal oligomerisation domain 481 526 IPR015415 -
Tpr4g0585 528 Pfam AAA+ lid domain 439 480 IPR041569 -
Tpr4g0585 528 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 12 528 - -
Tpr4g0585 528 PANTHER AAA DOMAIN-CONTAINING 12 528 - -
Tpr4g0585 528 MobiDBLite consensus disorder prediction 204 218 - -
Tpr4g0585 528 SMART AAA_5 276 419 IPR003593 -
Tpr4g0585 528 Gene3D - 418 504 - -
Tpr4g0585 528 Pfam ATPase family associated with various cellular activities (AAA) 280 417 IPR003959 GO:0005524|GO:0016887
Tpr4g0585 528 ProSitePatterns AAA-protein family signature. 389 408 IPR003960 GO:0005524|GO:0016887
Tpr4g0585 528 MobiDBLite consensus disorder prediction 86 105 - -
Tpr4g0585 528 MobiDBLite consensus disorder prediction 180 203 - -
Tpr4g0585 528 MobiDBLite consensus disorder prediction 112 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0585 Tpr-Chr4 5465414 5469244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0585 232 520 Calmodulin-binding Proteins AT3G56690 39.933 1.85e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0585 K07767 - zju:112489859 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0585 4 5465414 5469244 Tpr4g0585 4 5465414 5469244 ECH