Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0569 ATGCCGTTAACTGCTTCAATGGGATTCGGGTCGAGTTCTCTAATGTGGTTTCGAAAAGGAATTCGGATCCACGATAACCCGGCTCTCGAATATGCTTCACAAAGTTGTTCTCATCTTTACCCGCTTTTTATAATCGACCCACATTATATGAAACCCGACCCGAATGCTTTCTCACCCGGTTCATCTCGTGCGGGTCTTAATCGGATTAATTTCTTGCTTCAGAGTCTCAGTGATCTTGATATTAATCTTAAGAAGATTGGTTCGAGATTGTTAATTGTTAAGGGTGATCCTTATGAAGTTCTCATTCGTTGCTTGAAACAGTGGAACATTGGAAAGTTATGTTTTGAATATGACACTGATCCATATTATCAGGCTCTGGATATTAAAATCAAGGACTATGCTCTTAAGACAGGGATTGAGGTTTTCTCTCCTGTAAGCCACACGCTTTTCAATCCAACTGATATTATACAGAAGAATGGAGGCAAGCCGCCGCTTAGTTATCAGTCGTTTGTCAAGCTTGCAGGGGAACCGCCATCTCCGCTCTCAACAAGGTATTCTTCACTTCCTCCGGTTGGCCATCTTGGAAATTGTGATATTTCTGAAGTTCCAACCATCAAAGACCTTGGATATGGAGATGCTAAACTGGAGGAGTTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAAAGATTGGAAGAATGCATGAAAGACAAGAATTGGGTAGCAAACTTTGAAAAACCCAAGGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAACGCATTCAAGATGTATATAAAATTTTGCCAAAACATACTTCACCACCTGTGTCTCTTCTAGGACAGTTGTTGTGGCGAGACTTCTTCTACACTGCAGCTTTTGGGACTCCAAATTTCGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGACGATGATAAACTTCTGGAGGCTTGGAGAGATGCCAAGACAGGATTTCCTTGGATTGATGCCATCATGGTTCAGCTACGTCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCGTGTTTTTTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGATGTCTTTGATAGGCTTCTAATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGTACTTATTCTCCAACCACATTTGGTAAGAAGTATGACCCTAATGGTGACTATATTAGGAATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGCGTACATCTATGAACCATGGACTGCTCCTCCAAGCATTCAGGCCAAAGCAAATTGCATAATTGGAAAAGACTACCCAATGCCAGTTGTTTCTCACGACTCTGCAAGTAAAGAGTGTAAAAGGAAAATGGGCGAGGCTTATGCATTGAATAAAACACTGAATGGTTTGGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTGGATGAGGGTGAAGATCAAAGAACTAAAGCTAAAAGATCTAGGCAACTGCTAATTGGCTGA 1626 0.4071 MPLTASMGFGSSSLMWFRKGIRIHDNPALEYASQSCSHLYPLFIIDPHYMKPDPNAFSPGSSRAGLNRINFLLQSLSDLDINLKKIGSRLLIVKGDPYEVLIRCLKQWNIGKLCFEYDTDPYYQALDIKIKDYALKTGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFVKLAGEPPSPLSTRYSSLPPVGHLGNCDISEVPTIKDLGYGDAKLEEFSPFKGGESEALKRLEECMKDKNWVANFEKPKGNPSAFLKPATTILSPYLKFGCLSSRYFYQRIQDVYKILPKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWRDAKTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNGNWMWLSCSSFFYQYNRTYSPTTFGKKYDPNGDYIRNFLPVLKDMPKAYIYEPWTAPPSIQAKANCIIGKDYPMPVVSHDSASKECKRKMGEAYALNKTLNGLVSEDDLKNLRRKLDEGEDQRTKAKRSRQLLIG* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0569 541 Pfam FAD binding domain of DNA photolyase 300 496 IPR005101 -
Tpr4g0569 541 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 12 191 IPR036155 -
Tpr4g0569 541 Pfam DNA photolyase 13 173 IPR006050 -
Tpr4g0569 541 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 11 149 IPR006050 -
Tpr4g0569 541 PANTHER CRYPTOCHROME 12 506 IPR002081 -
Tpr4g0569 541 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 215 502 IPR036134 -
Tpr4g0569 541 Gene3D HUPs 9 146 IPR014729 -
Tpr4g0569 541 Coils Coil 515 535 - -
Tpr4g0569 541 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 316 540 - -
Tpr4g0569 541 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 12 506 - -
Tpr4g0569 541 Gene3D - 147 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0569 Tpr-Chr4 5304082 5311748 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0569 K02295 - gmx:100780347 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0569 4 5304082 5311748 Tpr4g0569 4 5304082 5311748 ECH