Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0561 ATGAGGAAAAATATGGTTGAAATTCTCAAATTCGTTACTGTTGTTTTTGTGATTTTTCTTTTTCTAATTGTTCTTGTAACTAGTGATAGTGATGATGATCCTATGTATTGCTCTACTAATGAAGAATGTGACACATATATTTGTACCAAAGGTCGTCAAGTTTCAATGTGCGCTTGGGTAATTTGCAGAGAAGTACTAAACATGAGTAGGCCAGGAGACTGGAACTGCAGGGCATGCCAACACATGAACTTTCAAAGGCGCGAATCGTGTCAAAGATGCGGAGATTCGAAATACGGAGACAGAATTGATTATGGATCAGTATTTGGAGGAATTAGAGGAGGATCTTCATTTGGTTTAAGTGGTTCAGATGTTCGTTTAGGTGATTGGTATTGTGGTGCTGGTAATTGTGGTGCACATAATTTTGCTAGTCGATTAAGTTGCTTCAAGTGTGGTGCTTTCAAAGATGAATTATCTGGTGGAGGATTTAACAATAGTGATATCTTGCTTTCAAGAGGTTTTGGTGGAAGTACAAGACCTGGATGGAAATCTGGTGACTGGATATGCAACAGGTTAGGATGCAATGAGCACAACTTTGCTAGTAGAATGGAATGTTTCAAATGCAGTGCACCAAGAGACACCTACTAG 645 0.3891 MRKNMVEILKFVTVVFVIFLFLIVLVTSDSDDDPMYCSTNEECDTYICTKGRQVSMCAWVICREVLNMSRPGDWNCRACQHMNFQRRESCQRCGDSKYGDRIDYGSVFGGIRGGSSFGLSGSDVRLGDWYCGAGNCGAHNFASRLSCFKCGAFKDELSGGGFNNSDILLSRGFGGSTRPGWKSGDWICNRLGCNEHNFASRMECFKCSAPRDTY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0561 214 SUPERFAMILY Ran binding protein zinc finger-like 120 155 IPR036443 -
Tpr4g0561 214 SUPERFAMILY Ran binding protein zinc finger-like 68 100 IPR036443 -
Tpr4g0561 214 PANTHER ZINC FINGER PROTEIN 45 213 - -
Tpr4g0561 214 Gene3D - 177 213 - -
Tpr4g0561 214 Gene3D - 67 99 - -
Tpr4g0561 214 Gene3D - 120 156 - -
Tpr4g0561 214 ProSiteProfiles Zinc finger RanBP2 type profile. 182 213 IPR001876 -
Tpr4g0561 214 Pfam Late nodulin protein 5 63 IPR009810 GO:0046872
Tpr4g0561 214 ProSiteProfiles Zinc finger RanBP2 type profile. 70 99 IPR001876 -
Tpr4g0561 214 ProSitePatterns Zinc finger RanBP2-type signature. 129 150 IPR001876 -
Tpr4g0561 214 SMART zf_4 72 96 IPR001876 -
Tpr4g0561 214 SMART zf_4 184 210 IPR001876 -
Tpr4g0561 214 SMART zf_4 127 153 IPR001876 -
Tpr4g0561 214 SUPERFAMILY Ran binding protein zinc finger-like 176 212 IPR036443 -
Tpr4g0561 214 ProSitePatterns Zinc finger RanBP2-type signature. 186 207 IPR001876 -
Tpr4g0561 214 PANTHER OS02G0203700 PROTEIN 45 213 - -
Tpr4g0561 214 Pfam Zn-finger in Ran binding protein and others 182 211 IPR001876 -
Tpr4g0561 214 Pfam Zn-finger in Ran binding protein and others 70 95 IPR001876 -
Tpr4g0561 214 Pfam Zn-finger in Ran binding protein and others 127 152 IPR001876 -
Tpr4g0561 214 ProSitePatterns Zinc finger RanBP2-type signature. 74 93 IPR001876 -
Tpr4g0561 214 ProSiteProfiles Zinc finger RanBP2 type profile. 125 156 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0561 Tpr-Chr4 5245238 5257026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0561 - - gmx:100527535 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3694 4 42850571 42851994 Tpr4g0561 4 5245238 5257026 ECH
Tpr4g0561 4 5245238 5257026 Tpr4g0561 4 5245238 5257026 ECH