Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0542 ATGGCTTTGGCACGTTTGGCTTTGAGAAATTTACAGCAAAGGGTATTATCAACAGGGTCATTGCAAAAACAATGCAATAGATTGAGTAATAATAATGAGTTGGTAGCAAGGTTTTCAACTGCAGTTGGTGAGAAGGGAAAATCTGAAGGTAGTGAAGTAGCTGTCTCAGAAGATAAGAAGTCAAGGTTGTTCCCAAGGAGGAGAGGTAGAAGATGGCTTTCTAGAGATTATGATCGTGACTTTCTTCCTGCTCCTTTTGAGCTATTTCCATCAGGTCTTGGAAATGCACTAATGCAAGCAACTGAGAACATCAACAAACTATTTGAAAACATGAATTTAACACCATGGTCATTAAGTGGACGTGTGAAAGAAAGTGACAACCATTATAAACTAAAGTATGACATGCCTGGAATCCCTAAAAAGGATGTGAAGATAACAATTGGTGATGGAGTGTTAACTATTAAGGGAGAACACAAAGAAGAGAAAGAAGAAGCAAGGGACAATGATGATCATGAGTATTGGTCATCATATGGTTATTATAATACTAGTTTGGTTTTGCCTGATGATGCTAAGGTTGATGAAATTAAGGCTGAGTTAAAGGATGGTGTCTTAATTGTTACCATTCCTAGGAGTGACAAGCTTATAAAAGATGTTAAGCATGTGAATGTTGAGTGA 675 0.3733 MALARLALRNLQQRVLSTGSLQKQCNRLSNNNELVARFSTAVGEKGKSEGSEVAVSEDKKSRLFPRRRGRRWLSRDYDRDFLPAPFELFPSGLGNALMQATENINKLFENMNLTPWSLSGRVKESDNHYKLKYDMPGIPKKDVKITIGDGVLTIKGEHKEEKEEARDNDDHEYWSSYGYYNTSLVLPDDAKVDEIKAELKDGVLIVTIPRSDKLIKDVKHVNVE* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0542 224 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 5 224 - -
Tpr4g0542 224 SUPERFAMILY HSP20-like chaperones 110 221 IPR008978 -
Tpr4g0542 224 Pfam Hsp20/alpha crystallin family 122 223 IPR002068 -
Tpr4g0542 224 Gene3D - 73 224 IPR008978 -
Tpr4g0542 224 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 107 224 IPR002068 -
Tpr4g0542 224 CDD ACD_sHsps-like 122 210 - -
Tpr4g0542 224 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 5 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0542 Tpr-Chr4 5123743 5126297 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0542 K13993 - gmx:100787482 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0542 4 5123743 5126297 Tpr4g0542 4 5123743 5126297 ECH