Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0533 ATGGAGATTGAAACGCAGCAGAAGAATGATGTCAAAGATGAGGTTTTGTCGGTTGAACTTTCAGCTCCTCCTTCTTGGAAGAAACTGTTCTTCCCCAAGAAAGTAGGAACACCAAGAAAAAGCGAGATCGTATTCGTTGCTCCAACCGGAGAAGAGATAAGCTCCAAAAAACAACTGGAGAAGTACCTAAAGGCACATCCAGGGAATCCTAACATATCAGAGTTTGATTGGGGGACTGGCGAGACACCAAGACGATCAACAAGGATTAGTGAGAAGGTCAAAACAACTTCGCCACCCTCAGAAGCTGAGCCTCCGAAGAAACGTAGTCGAAAATCATCTTCAAAGAAGGATGACAAGGAAACTGAAACTGAATCCCCTGCAGAGGAAGGCAAAGAAAAGTCTTCCGCAGAAGAACCGAAAGGCGATCCAATCGATGCCGATAACAATGTTGATGATAAAACAAAGAATGACGATGCAGAGGAAATTAAGCAAAGTAATGCAGAAGGTGAATCTTTTCAAGAAGCTTTGAATGCCGCGGTTGATGAGGAAATAGTTGAAACGCCAAAAGAAAACGGTACAATTGACAGTAATAAGCAGGAAAAATCAAGTGGCACTGAGGAAAATGAAGGAGCTGAGAAAGTGAGCCTCAATGTTGAAGATACTAAGGCAGAAGGTGAACTTGTTCATGAAACTTTGAATGTTGTGGTTGAGGAGGCAATAGTTGAATCGGAAAAAGAAAACGGAACAATCGATGGTAGTAAGCAGGGAAAATCAGGCGGTGCCGAGGAAAATGCAGCAGCTGAAAATGCGAGTCACAATGTTGAAGATATTATTAATGGTAAGAATGAAATTCCAGCAAGTGATGAAAAACAAACCATTCAAGGTGAGGAACAAGTGAAGAAAATGGTTGACAATGAAAGTGTTATTTGGAGCTTTGCTCAATGA 945 0.4169 MEIETQQKNDVKDEVLSVELSAPPSWKKLFFPKKVGTPRKSEIVFVAPTGEEISSKKQLEKYLKAHPGNPNISEFDWGTGETPRRSTRISEKVKTTSPPSEAEPPKKRSRKSSSKKDDKETETESPAEEGKEKSSAEEPKGDPIDADNNVDDKTKNDDAEEIKQSNAEGESFQEALNAAVDEEIVETPKENGTIDSNKQEKSSGTEENEGAEKVSLNVEDTKAEGELVHETLNVVVEEAIVESEKENGTIDGSKQGKSGGAEENAAAENASHNVEDIINGKNEIPASDEKQTIQGEEQVKKMVDNESVIWSFAQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0533 314 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE 11 298 - -
Tpr4g0533 314 SUPERFAMILY DNA-binding domain 12 109 IPR016177 GO:0003677
Tpr4g0533 314 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 12 82 IPR001739 GO:0003677
Tpr4g0533 314 MobiDBLite consensus disorder prediction 101 167 - -
Tpr4g0533 314 CDD MeCP2_MBD 22 87 - -
Tpr4g0533 314 MobiDBLite consensus disorder prediction 62 224 - -
Tpr4g0533 314 MobiDBLite consensus disorder prediction 239 275 - -
Tpr4g0533 314 Pfam Methyl-CpG binding domain 20 81 IPR001739 GO:0003677
Tpr4g0533 314 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 11 298 IPR039622 -
Tpr4g0533 314 MobiDBLite consensus disorder prediction 183 224 - -
Tpr4g0533 314 Gene3D - 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0533 Tpr-Chr4 5059447 5062532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0533 - - lja:Lj3g3v2200290.1 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0533 4 5059447 5062532 Tpr4g0533 4 5059447 5062532 ECH