Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0520 ATGGTGTTTTCTACTATGTTTTCTTCCACTCTCAACCTTGCCATTTCTTCAACTACCAACAGTAGCAGAAGAAGAGTATCAAACACAAGTTCAAGAAGAGGAGTGAATAGTATGAGAATCAGAGCTAGCTCCACAGAGAAAGGTGAATCAAAAGAGAAAGATCAAGATGACAAATCATCATTCAACCCTTTTGGTTTTGTTACTGATAACCCTTCAAGCAGAAGTGCCATTCAATTGCCTGAAACTCCTGCTGATGATGGCAACGTTGGACAAATGATTGATAGAATACAAGACAAGGGCAAGGAATACGGATCATACGTAAAATCCGGGAAGTTGAGATGGTTTGTGAGGGAAACTGGATCAGCAAAAAGCAGACGAGGAACAATTGTATTCCTTCACGGTGCCCCGACGCAATCTTTTAGCTACCGAGTTGTTATGTCTCAGTTGTCAGATTTAGGATTCCACTGCTATGCACCAGATTGGATAGGATTTGGTTTCAGTGACAAGCCACAGCCAGGATATGGTTTTGATTACACAGAAAAGGAGTTCCATGATGCATTGGATAAACTGCTTGAAGTGTTGGGGGTTGAATCTCCATTTTTCCTAGTTGTTCAGGGATTCCTCGTAGGTTCATATGGACTAACATGGGCCTTGAAGAATTCAAGCAAGATATCAAAGCTAGCAATACTAAACACTCCATTAACAAGTTCATCTCCTCTTCCTGGACTATTTCAGCAGCTAAAGATTCCTCTATTCGGTGAATTTCAAAGCCAGAATGCTATTATTGCCGAGCGGTTTATTGAAGCAGGTAGCCCTTATGTTCTGAAAAATGAAAAGGCTGATGTTTACCGGCTACCTTATTTGGCAAGCAGCGGACCTGGATTCGCTATACTTGCAGCTGCAAGAAAAGCTAACTTCAAAGGTACCTTCAATGAAATAGCAGAAGGATTTGCAACTAACAGATGGGACAAACCAATATTGCTTGCATGGGGATTATCAGACAAGTACTTACCTCAGTCAGTGGCAGAAGAGTTTCAGAATGGAAATCCTCAAAACATCAAGCTTAAATTGATAGAAGGAGCTGGACATATGCCTCAAGAGGATTGGCCTGAGAAAGTTACCGATGCTTTTAGAGTGTTCTTCTGA 1146 0.4127 MVFSTMFSSTLNLAISSTTNSSRRRVSNTSSRRGVNSMRIRASSTEKGESKEKDQDDKSSFNPFGFVTDNPSSRSAIQLPETPADDGNVGQMIDRIQDKGKEYGSYVKSGKLRWFVRETGSAKSRRGTIVFLHGAPTQSFSYRVVMSQLSDLGFHCYAPDWIGFGFSDKPQPGYGFDYTEKEFHDALDKLLEVLGVESPFFLVVQGFLVGSYGLTWALKNSSKISKLAILNTPLTSSSPLPGLFQQLKIPLFGEFQSQNAIIAERFIEAGSPYVLKNEKADVYRLPYLASSGPGFAILAAARKANFKGTFNEIAEGFATNRWDKPILLAWGLSDKYLPQSVAEEFQNGNPQNIKLKLIEGAGHMPQEDWPEKVTDAFRVFF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0520 381 Pfam alpha/beta hydrolase fold 128 368 IPR000073 -
Tpr4g0520 381 Gene3D alpha/beta hydrolase 93 381 IPR029058 -
Tpr4g0520 381 PANTHER HYDROLASE ALPHA/BETA FOLD FAMILY 81 381 - -
Tpr4g0520 381 MobiDBLite consensus disorder prediction 44 59 - -
Tpr4g0520 381 MobiDBLite consensus disorder prediction 20 63 - -
Tpr4g0520 381 PRINTS Alpha/beta hydrolase fold signature 153 168 IPR000073 -
Tpr4g0520 381 PRINTS Alpha/beta hydrolase fold signature 217 230 IPR000073 -
Tpr4g0520 381 PRINTS Alpha/beta hydrolase fold signature 326 340 IPR000073 -
Tpr4g0520 381 SUPERFAMILY alpha/beta-Hydrolases 105 380 IPR029058 -
Tpr4g0520 381 MobiDBLite consensus disorder prediction 20 43 - -
Tpr4g0520 381 PRINTS Epoxide hydrolase signature 133 151 IPR000639 GO:0003824
Tpr4g0520 381 PRINTS Epoxide hydrolase signature 153 168 IPR000639 GO:0003824
Tpr4g0520 381 PRINTS Epoxide hydrolase signature 358 380 IPR000639 GO:0003824
Tpr4g0520 381 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 81 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0520 Tpr-Chr4 4955690 4961294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0520 128 239 Acyl Lipid Metabolism Gene Families AT3G05600 32.759 6.12e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0520 - - gmx:100807417 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0520 4 4955690 4961294 Tpr4g0520 4 4955690 4961294 ECH