Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0507 ATGTCATATTTTGGTTACGAGAATATTTTGTCGATGGGTGGAGCGTGTTCTAGGAGGCAAGAGCGGGATAGTGAAGATAGTCTTAGTAGAGGATTTTCAAGGAAATATTGCAAATCTGGGAGTTTAAAATGGTGGACATCATCGTTTTCTTATCCATCCATGGATATACGTGTACAAAAAGGAGAATGTTCATCGCTGTTGGACATGTGTGTCCAGAAAATAAGCGAGGATGTTGATAGGCATAACACATTTTCTATGCTTCCACGGGATATAAGTCAGCAAATTTTAAATAATTTGGTCTACTACCGACGTCTTACTGGTGGTTCTTTCGAAGCTTTCCGAGATTGTGCTCTCCAGGATCTATACTTGGGAGAATATGCTGGTGTTGATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCTTTACTTTCGGTAGATCTTTCTGGGTCTGATGTTACTGATTTTGGATTGACTTACCTTAAAGATTGTCAGAGTCTCATGTCCTTAAATCTAAATTACTGTGACCAAATTTCAGATCATGGACTGGAATGCATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATATCAGCTCAAGGATTGAGTGCCTTCTCTGGTCTTGTCAACCTGGTCAAGTTGGATTTGGAGAGATGTACTGGGATTCATGGAGGCATTGTCCATCTTCAAGGTTTAACTAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACAGATTCCGATATGAAGCCTCTATCAGAACTTACAAGCTTGACAAGTCTAGAGATTTCATGTAGTAAAGTCACTGATTTTGGCATCAATTTTCTAAGAGGATTACAGAAGCTTGTCCTGTTAAATTTGGAAGGGTGCCTTGTAACATCTGCATGCTTGGATTCTCTGGCAGAACTTCCTGCACTGTCAAACTTGAATCTTAATAGATGCAATATTTCTGACAGAGGGTGTGAAAAGTTTTCAAGACTGGAAAAGTTGAAAGTATTAAACTTGGGATTTAATGACATTGGAGATACATGTTTAGTTCATTTGAAAGGAATGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAGCAATTGATCTGCTTGGAATTGTCTGATACGGAAGTTGGAAACAATGGCCTAGAGCATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATTTGTCCTTCACTGTTGTTAGTGATAGTGGTTTAAGGAAATTGTGTGGATTATCATCTCTGAAGTCGCTTAATTTGGATGCTTATCAAATTACTGATGCTGGACTGGCAATACTTACAAGTTTGACCAGCCTCACTGACCTTGATTTGTTTGGTGCTCGGATCACAGATGTTGGGACAAATTATTTGAAAAAATTCAAAAACCTGAGGTCCTTGGAAATATGCAGCGGTGGATTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCGCTAATGTGCTTAAATTTATCACAAAACAGCTGCCTTACGGACAAAACAGTGGAGTTAATTGCTGGACTCACTTCATTGGTTTCTTTGAATCTTTCAAATTCACGCATCACCTCTGCTGGACTGCAGCATTTGAAAACACTCAAAAGCTTGAGATCTCTGACATTGGAGTCATGTAGGGTGACCGCAAACGATATAAAGAAATTTAAATCAACGCACCTCCCAAATTTGGTAAGCTTCAGGCCCGAGTAG 1767 0.3905 MSYFGYENILSMGGACSRRQERDSEDSLSRGFSRKYCKSGSLKWWTSSFSYPSMDIRVQKGECSSLLDMCVQKISEDVDRHNTFSMLPRDISQQILNNLVYYRRLTGGSFEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKDCQSLMSLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSISAQGLSAFSGLVNLVKLDLERCTGIHGGIVHLQGLTKLESLNMKWCNCITDSDMKPLSELTSLTSLEISCSKVTDFGINFLRGLQKLVLLNLEGCLVTSACLDSLAELPALSNLNLNRCNISDRGCEKFSRLEKLKVLNLGFNDIGDTCLVHLKGMTKLESLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLAILTSLTSLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSCLTDKTVELIAGLTSLVSLNLSNSRITSAGLQHLKTLKSLRSLTLESCRVTANDIKKFKSTHLPNLVSFRPE* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0507 588 Pfam Leucine Rich repeat 456 473 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine Rich repeat 240 262 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine Rich repeat 191 213 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine Rich repeat 165 188 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine Rich repeat 409 430 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine rich repeat 313 373 IPR001611 GO:0005515
Tpr4g0507 588 Pfam Leucine rich repeat 482 542 IPR001611 GO:0005515
Tpr4g0507 588 Gene3D Ribonuclease Inhibitor 100 230 IPR032675 -
Tpr4g0507 588 Gene3D Ribonuclease Inhibitor 231 309 IPR032675 -
Tpr4g0507 588 Gene3D Ribonuclease Inhibitor 489 583 IPR032675 -
Tpr4g0507 588 Gene3D Ribonuclease Inhibitor 385 468 IPR032675 -
Tpr4g0507 588 SUPERFAMILY L domain-like 389 579 - -
Tpr4g0507 588 Gene3D Ribonuclease Inhibitor 310 384 IPR032675 -
Tpr4g0507 588 PANTHER UNCHARACTERIZED 13 545 - -
Tpr4g0507 588 SUPERFAMILY RNI-like 138 449 - -
Tpr4g0507 588 SMART LRR_CC_2 360 384 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 408 432 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 504 529 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 530 553 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 312 336 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 239 264 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 433 456 IPR006553 -
Tpr4g0507 588 SMART LRR_CC_2 165 190 IPR006553 -
Tpr4g0507 588 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 13 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0507 Tpr-Chr4 4792803 4803628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0507 132 438 Receptor kinase-like Gene Family AT5G51350 25.806 2.63e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0507 - - gmx:100795219 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0507 4 4792803 4803628 Tpr4g0507 4 4792803 4803628 ECH