Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0506 ATGTCATCTCTGAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAGGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAATGGGAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGAAAGCAAAAGTATCTTGAGGCATTGGATAAGCATGATCGGTCGAAGGCTGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAACAGTTGTCTAAGTATGGTGATACTAAGTCTGCGCGGGCAATCATGTTGGTTGAGCTTAAGAAGCTGATTGAAGCAAATCCCTTATTTCGCGACAAATTGCAGTTTCCTAACCTTAAAAACTCGAGGTTGAGGACACTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAATCCACGTCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCCAACAATCCACTATTAGGATCCTTACCAAAGGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTCCAACCTACTCCGGCACCAGTGCCAACCCAGCTCGCCGGTTGGATGTCAAATCCTACCCCTGTAGCACATGCTGCAGTTTCTGGTGGAGGAACTATAGGTCTTGGTGCTCCATCAATGCCTGGTGCTTTGAAGCATCCTCGGACGCCTCCACCTAATCTTTCTGTTGACTATCCATCGGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATAACAGATGAGGTAAATCTACCTGTCAATGTGTTGTCGGCACCATTCCCAGGGCATGGTCATAGTCAGGCTTTTAATGCACCTGATGACTTGCCGCTACCAAAGACTGTCATGCGAACTCTGAATCAGGGCTCATCTCCTATGAGCATGGACTTCCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATTGCATTATGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAAGCGTTTCTGTTAACCGTGTGATTTGGAGTCCTGATGGCGCTTTATTTGGAGTTGCATATTCGAGGCACATTGTTCAAATATACTCTTATCATGGTGGGGAGGAAGTTCGGCAGCACTTGGAGATTGATGCTCATGTTGGCGGAGTAAATGATCTAGCATTTTCCCACCCGAATAAGCAACTGTGTGTGATAACTTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGAACAAAGCAGTATACATTTGAAGGTCACGAGGCTCCAGTTTATTCAGTCTGTCCGCATTACAAAGAAAACATTCAGTTCATCTTTTCAACAGCGCTAGACGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACTATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGATGGAGAATCCTCTATTGTGGAGTGGAATGAGAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAACGGTCTTCAGGCGTTGTGCAATTTGATACTACTAAAAATCGATTTTTGACTGCTGGCGACGATTTCTCGATTAAATTTTGGGATATGGATAATATTCAGCTTTTGACAACCGTTGATGCTGATGGGGGTCTTCCTGCAAGTCCACGTATTCGTTTCAACAAGGAGGGAACTCTTCTAGCCGTCTCAGCAAATGATAATGGAATCAAAATTATAGCCAATGCTGAGGGTATCCGTTTATTGCGTACATTAGAGAATTCTATGTACGATGCATCAAGAGCATCAGAATTAGCAAAGCCTACTATAAATTCAATGTCTTCTGCTGCCGCTGCAACTAGTGCTGCCCTAGCTGAGAGAGCTTCATCCGCAGCGGCTATTGCTGGAATGAATGGCGACGCTCGAAACATGGGCGATGTTAAACCTAGAATAACCGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACCATCTCATTGTAGATCCTTGAAGCTGCCAGAGAATGTTAGAGTAAACAAGATTTCGAGGTTGATCTATACAAATTCAGGTAATGCTATTCTAGCGTTGGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGATCGTAATTCATCTGGCAAGGCCAATGCCTCTGTGCAACCTCAGTTATGGCAACCATCGAGTGGCATCCTGATGACTAATGACATCGCTGATAGCAATCCTGAAGATTCTGTTCCCTGCTTTGCTCTGTCGAAAAATGATTCGTATGTAATGTCTGCATCAGGAGGAAAGATATCCTTGTTCAACATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCACCACCTGCTGCTACCTTTCTTGCTTTCCATCCTCAGGACAACAATATTATTGCTATTGGCATGGATGATTCCTCCATTCAGATATACAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGGATAACTGGTCTTGCTTTCTCCCACGTATTGAATGTTCTTGTTTCATCCGGTGCGGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAGACCAGATTCTTGCAGCTACCTCCCGGGAGGACTCCATCAGCACAGTCAGATACTCGTGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTTGCCATTTTTGAAGCAACTAAGCTAGATTGTCTAAAGCAGTGGGCTCCAAGGGATTCTTCTGCACCAATATCACATGCAACATTTTCGTGCGACAGCCAGCTGATATATGCAAGCTTTTTAGATGCGACTGTCTGTGTATTTAATGCTTCAAATCTCAGATTACGGTGTCGTATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAATTCAAATGTACAACCACTAGTAATTGCAGCACATCCACAAGAACCAAATCAGTTTGCTGTAGGACTATCTGATGGTGGAGTTCATGTGTTTGAGCCACTCGAATCAGAAGGCAAATGGGGAGTGCCACCTCCGGTTGAAAACGGATCAGCTAGCAATAATGTAGCAGTAGCTACTTCAGTTGGACTTTCTTCAGATCAAGCACAAAGATGA 3411 0.4304 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTQLAGWMSNPTPVAHAAVSGGGTIGLGAPSMPGALKHPRTPPPNLSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSAPFPGHGHSQAFNAPDDLPLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGEEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSSGVVQFDTTKNRFLTAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGTLLAVSANDNGIKIIANAEGIRLLRTLENSMYDASRASELAKPTINSMSSAAAATSAALAERASSAAAIAGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNDRNSSGKANASVQPQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLDCLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSNSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPVENGSASNNVAVATSVGLSSDQAQR* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0506 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 961 IPR001680 GO:0005515
Tpr4g0506 1136 Gene3D - 331 546 IPR015943 GO:0005515
Tpr4g0506 1136 Gene3D - 551 689 IPR015943 GO:0005515
Tpr4g0506 1136 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1136 IPR027728 GO:0006355
Tpr4g0506 1136 SMART WD40_4 830 867 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 586 626 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 1058 1098 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 452 493 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 496 537 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 629 670 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 913 952 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 870 910 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 540 583 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 346 385 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 407 446 IPR001680 GO:0005515
Tpr4g0506 1136 SMART WD40_4 1004 1045 IPR001680 GO:0005515
Tpr4g0506 1136 SMART Lish 4 36 IPR006594 GO:0005515
Tpr4g0506 1136 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 938 1106 - -
Tpr4g0506 1136 SUPERFAMILY WD40 repeat-like 350 453 IPR036322 GO:0005515
Tpr4g0506 1136 Pfam WD domain, G-beta repeat 919 952 IPR001680 GO:0005515
Tpr4g0506 1136 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Tpr4g0506 1136 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tpr4g0506 1136 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 424 957 IPR011047 -
Tpr4g0506 1136 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tpr4g0506 1136 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1136 - -
Tpr4g0506 1136 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Tpr4g0506 1136 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 952 - -
Tpr4g0506 1136 CDD WD40 360 668 - -
Tpr4g0506 1136 Gene3D - 803 1099 IPR015943 GO:0005515
Tpr4g0506 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Tpr4g0506 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Tpr4g0506 1136 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0506 Tpr-Chr4 4778554 4787752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0506 457 633 Miscellaneous Gene Families AT5G08390 23.889 2.23e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0506 - - gmx:100795759 2098.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0506 4 4778554 4787752 Tpr4g0506 4 4778554 4787752 ECH