Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0398 ATGAAGAAGCAACTAGCACCACTTGTTCTATTCTCTCTCACACTACTAATCTCACTCATTCATTCCACCACCGCCGGTGCCGCCACCTCCGGCAGCCACAATATCACCCGCATTCTAGCCAAACACCCTGGATTTTCCACCTTCAACCACTACCTAACCATCACTCACCTAGCCGATGAAATCAACCGCCGTCAAACCATAACAATCCTCGCCATCGACAATGCCGCCATGTCATCCCTCCTCGACAAACACCTCTCCGTCAGCACTCTCAAAAATGTCCTCTCCCTCCATGTCTTAGTCGACTACTTTGGCGCCAAAAAACTTCATCAAATCACCAACGGTACAACTCTCGTTTCCTCCATGTTTCAAGCAACCGGATCCGCCGCCGGAACTGCCGGTTACGTCAATGTAACAAATCTAAAAGGTGGTAAAGTCGGGTTTGCAGCTGAAGATAACGACGGATTACACTCATTCTACGTAAAATCCATTGAAGAACTTCCTTACGTCATCTCCGTTCTTGAAATCAGTCAACCTTTAAGCTCAGCCGACGCCGAAGCACCGACGGCAGCGCCTAGCGATATCGATTTAATCGCAATTATGTCAAAACAAGGTTGCAAAGCATTCGCTGATTTGTTACGCGTTTCAAAAGCACTTCCAACTTTCAAAGAAACCGTAGACGGAGGTTTAACTGTTTTCTGTCCAACTGACAGCGCCGTTAACGGTTTTTCAGCAAAATACAAAAACCTAACAGATTCTAAAAAAGTTTCACTTCTGTTATATCACGGAGTTCCCGTTTACCAATCGTTACAAATGTTGAAATCAAATAACGGAATTATGAACACATTAGCAACAGAAGGTGCTAACAAATACGATTTCACAGTTCAAAATGACGGTGAAGATGTTAATCTAGAAACAAAAGTCAACACCGCGAATATCATCGGAACTTTGATAGATCAAGATCCATTTGTGGTTTATAAGATTAACAAAGTTTTGATGCCTAGAGAATTGTTTAAGGGAGTGAAAGAAGATTTAGCACCTGCTGAATCACCTAAACCAGCGAAGAAGAAGAAAACAACTAAGAAAGGTAAGGCACCGGCGGCGGATGAAGATGCTGATTCACCGGCGGATGGACCAGATGCGGATGCGGATTCCGATGATGAGAAAGCTGCTGATGATAATGGAGTCAGTGGATTAAATCAAGGGTTCAGATTCGTTATGGTATTTTTCAGTTTATTTATTGGGTTTTTGGTTCTATAA 1257 0.4328 MKKQLAPLVLFSLTLLISLIHSTTAGAATSGSHNITRILAKHPGFSTFNHYLTITHLADEINRRQTITILAIDNAAMSSLLDKHLSVSTLKNVLSLHVLVDYFGAKKLHQITNGTTLVSSMFQATGSAAGTAGYVNVTNLKGGKVGFAAEDNDGLHSFYVKSIEELPYVISVLEISQPLSSADAEAPTAAPSDIDLIAIMSKQGCKAFADLLRVSKALPTFKETVDGGLTVFCPTDSAVNGFSAKYKNLTDSKKVSLLLYHGVPVYQSLQMLKSNNGIMNTLATEGANKYDFTVQNDGEDVNLETKVNTANIIGTLIDQDPFVVYKINKVLMPRELFKGVKEDLAPAESPKPAKKKKTTKKGKAPAADEDADSPADGPDADADSDDEKAADDNGVSGLNQGFRFVMVFFSLFIGFLVL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0398 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 416 IPR033254 -
Tpr4g0398 418 SUPERFAMILY FAS1 domain 38 151 IPR036378 -
Tpr4g0398 418 MobiDBLite consensus disorder prediction 372 388 - -
Tpr4g0398 418 SMART fasc_3 230 334 IPR000782 -
Tpr4g0398 418 SMART fasc_3 68 170 IPR000782 -
Tpr4g0398 418 ProSiteProfiles FAS1/BIgH3 domain profile. 192 331 IPR000782 -
Tpr4g0398 418 Gene3D FAS1 domain 196 333 IPR036378 -
Tpr4g0398 418 Gene3D FAS1 domain 32 162 IPR036378 -
Tpr4g0398 418 ProSiteProfiles FAS1/BIgH3 domain profile. 32 198 IPR000782 -
Tpr4g0398 418 SUPERFAMILY FAS1 domain 189 334 IPR036378 -
Tpr4g0398 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 12 416 - -
Tpr4g0398 418 Pfam Fasciclin domain 205 333 IPR000782 -
Tpr4g0398 418 Pfam Fasciclin domain 44 120 IPR000782 -
Tpr4g0398 418 MobiDBLite consensus disorder prediction 343 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0398 Tpr-Chr4 3837584 3839794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0398 - - gmx:100799605 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0398 4 3837584 3839794 Tpr4g0398 4 3837584 3839794 ECH