Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0173 ATGGACATATCAGACTATACAAGAATTTTATTTGATAAAATTCAGAAATTCGAGCCCGATAATGCTACAAAGATAATGGGCTATCTCCTTTTGCAAGACCACAGTGAACAAGAATTGGCTAGCTTGGCTTCTTGTCCTGACCATATCATCAGTGAAGTTGTGTTTAAGGCGAAAACCGATCTTCAAATGTTGGCTGTTAATTCAACCATGATGCCAATTTCACCACCCAATGTTAACCCTCAACAAGGTTTAAGCCATTTTCCGGGGTTATCTTCGTCTTCACCACCGAACTTTCAGCTTCCGTCTGCCTACTGGAATCCACAATCTGCTAGTAATGCCAATCCTGAATATATGGGAATGAATTACATGGATTCTCTCGCAGAACTTCAGAAACAAACACAGTTGTTGAGTTTGGAGAATCGTTTAGATCATGTGAATATCGGAACTCGAGGCGTTGCTGTCAATGATTATAACAATGGCTTAGTTGATGCTTCTGCTGTCAATTTCGGTGGAAAACCTACTAAAAGGCTTTCACATTCAAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGACATGGAAGTAACTGCCGATATTTTCATGGTCAAGTTCCTCATGATAGCTTCTCTCCTCATATGCATGGAAATAATGATAGTAATGAGGATCCGGTGATGTCGCCAGGTTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTGAAGCAGCGAAGAGGTAATCCAATGTCAATTGCTTCATTGCCGATGGCATACTATGACAAGTATAAAAAGGTATTGCAAGCTCAAGGTTATTTAACCGAGAGTCAGAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGTGCGACTCAATAGCATTCGGCTAATCGACAGGCCTCATGGACAGCATGCAGTGATACTGGCTGAAGATGCACCGAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCTTTGCGACAGATATATTTGACTTTTCCAGCTGACAGCACCTTCACAGAAGAGGATGTTGCAAACTACTTCAACACATTTGGATTTGTTGAAGATGTTAGGATTCCATGCCAGCAGAGACGGATGTTTGGTTTTGTAACATTTGCTGATCCTGAAACGGTTAGAATGATTCTGGATAAGGGAAATCCCCATTATGTTCGAGGGTCTCGTGTGCTCGTGAAGCCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCAAGATAAGATGGAGCACTCTATTTGCTGTCCCCATCACTTTGCAAATATTGACTCCGAACTCGACTCAATTCCAATAAGTTATGGGACCCAAAGATCTCTAAGGAGACAGTGGATGGAAGAACAAGAAGCTCTTGAATTGCAAAGGAGACGTCTTGCGCATGCGCAGTTGCAGTTTACGCAAAGACCTTTGCCCATTTCACCTCAGTTCGGCTGCTTCCCCATGGATGCATTAAGAGTTCCAGATGATCATTTCAATATCCAGTCTACGGAAGCTCCCAATTATGCGTTGAATAACAAAACCAAGAATGCCGACACTGATTCCTCTGAAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATAG 1641 0.4186 MDISDYTRILFDKIQKFEPDNATKIMGYLLLQDHSEQELASLASCPDHIISEVVFKAKTDLQMLAVNSTMMPISPPNVNPQQGLSHFPGLSSSSPPNFQLPSAYWNPQSASNANPEYMGMNYMDSLAELQKQTQLLSLENRLDHVNIGTRGVAVNDYNNGLVDASAVNFGGKPTKRLSHSNMSEFPLKICHYFSKGYCRHGSNCRYFHGQVPHDSFSPHMHGNNDSNEDPVMSPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAQGYLTESQRHGKSGYSLTKLLVRLNSIRLIDRPHGQHAVILAEDAPKYIQKGDSVQNISALRQIYLTFPADSTFTEEDVANYFNTFGFVEDVRIPCQQRRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYQDKMEHSICCPHHFANIDSELDSIPISYGTQRSLRRQWMEEQEALELQRRRLAHAQLQFTQRPLPISPQFGCFPMDALRVPDDHFNIQSTEAPNYALNNKTKNADTDSSEGNSNEGLNLPDSPFA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0173 546 ProSiteProfiles OST-type HTH domain profile. 236 319 IPR025605 -
Tpr4g0173 546 MobiDBLite consensus disorder prediction 511 540 - -
Tpr4g0173 546 Gene3D - 149 219 - -
Tpr4g0173 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 412 IPR000504 GO:0003723
Tpr4g0173 546 Gene3D - 344 416 IPR012677 -
Tpr4g0173 546 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 546 - -
Tpr4g0173 546 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 546 - -
Tpr4g0173 546 SUPERFAMILY CCCH zinc finger 187 209 IPR036855 GO:0046872
Tpr4g0173 546 MobiDBLite consensus disorder prediction 511 546 - -
Tpr4g0173 546 SMART rrm1_1 338 408 IPR000504 GO:0003723
Tpr4g0173 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 404 IPR000504 GO:0003723
Tpr4g0173 546 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Tpr4g0173 546 Pfam OST-HTH/LOTUS domain 236 313 IPR025605 -
Tpr4g0173 546 SUPERFAMILY RNA-binding domain, RBD 348 424 IPR035979 GO:0003676
Tpr4g0173 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 210 IPR000571 GO:0046872
Tpr4g0173 546 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0173 Tpr-Chr4 1914070 1919080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0173 - - gmx:100818984 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0173 4 1914070 1919080 Tpr4g0173 4 1914070 1919080 ECH
Tpr3g4044 3 45014709 45019408 Tpr4g0173 4 1914070 1919080 PCT