Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0104 ATGGCGAACGATAACGAACCCGCGAAGCTTTTGCTACCATACCTTCAACGCGCTGATGAATTACAGAAACACGAACCTCTCGTCGCTTACTACTGTCGATTATATGCGATGGAAAGAGGATTGAAGATTCCACAAAGTGATCGCACTAAGACCACTAATGCTCTTCTTGTGTCTCTCATGAAACAGCTCGAAAAGGATAAGAAGACAACCCAGGTTGGGCCTGAAGATAATCTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCTGATTTGAACACAGCAAAAACATTTTACGCTGCTAGCATATTTTTTGAGATTCTTAACCAATTTGGAGCTGTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGCATGGAAAGCAGCTGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCATGGCTGGCCCGCCTGCTGGTGATGAGGACCTCTCACTTCCATTGAGTTCTCCTAGTAATAGATATGATCTTGGGACTACTGAAACGTCTGCTTCTAGTGCTGGATCTGAATCCGATTCAACACATAGTTATCATAACCCTGTCAACTACCAGAATCTGCCAAGCATTCCTCCTGTACCTAAGTTCCATGATACTCTCAATGATCAGAATTCTGCAAACATTCCACCATCTTTGCAGTTTCATGATAGGGTAGATGATAATAAGCATTCTTCAACTGCTTCTCCATCATCTCACTCTTATACACCCGGAGGTTATCCTTCCCAAGACTTCCATCCTCCTCCATCTTCCCAGGATTATCATCATCCACCACCTTCCCATGATTACCATTCTTCTGCACCTTCCCAAGATTATCATCCTCCTCCACCTTCCCACGATTACCATTCTTCTGCACCTTCCCAGGAGTACCATCCTCCCCCACCTTCCCAGGATTATCAACCTCCTCCACCTTCCCAAGATTATCAACCTCCTCCACCTTCCCAAAATTACCCTCATCCTCCACCTGCCAGGTCAGACAGTTCTTATTCTGAGCACTATAACCACCAGCAATACTCACCAGATCAGTCACAGAATTTAGGTCCAAATTACCCTTCTCATGAAACTCCAGCTCCTTATTCGCTTCCCCATTTTCAATCTTATCCAAGTTTTACAGAAAGCAGCCTACCATCGGTACCAGTAAACCACACTTATTATCAAGGGCCTGATGCTTCTTTTTCTTCCCAGTCAGCTCCTCTAACTACAAACCATTCATCAAGTGCCCAAAACAGTTCAAGCAGCAGAAATGGAACTGCCTCAGAACCCAAGCCAGCAACTCAATCATACCAGTATGACAGTAGCTACCAGCCAGCACCTGAAAGAATAGCAGAGGCACACAAAGCTGCAAGATTTGCTGTTGGGGCACTGGCATTTGACGACGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTCGAGTTGCTAACAAATCCATCAGTTGGCCAGTAA 1497 0.4462 MANDNEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSDRTKTTNALLVSLMKQLEKDKKTTQVGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGAVQPDLEQKQKYAAWKAADIRKALKEGRKPMAGPPAGDEDLSLPLSSPSNRYDLGTTETSASSAGSESDSTHSYHNPVNYQNLPSIPPVPKFHDTLNDQNSANIPPSLQFHDRVDDNKHSSTASPSSHSYTPGGYPSQDFHPPPSSQDYHHPPPSHDYHSSAPSQDYHPPPPSHDYHSSAPSQEYHPPPPSQDYQPPPPSQDYQPPPPSQNYPHPPPARSDSSYSEHYNHQQYSPDQSQNLGPNYPSHETPAPYSLPHFQSYPSFTESSLPSVPVNHTYYQGPDASFSSQSAPLTTNHSSSAQNSSSSRNGTASEPKPATQSYQYDSSYQPAPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVGQ* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0104 498 MobiDBLite consensus disorder prediction 406 454 - -
Tpr4g0104 498 MobiDBLite consensus disorder prediction 338 368 - -
Tpr4g0104 498 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 323 IPR044538 GO:0032511
Tpr4g0104 498 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 300 495 IPR044538 GO:0032511
Tpr4g0104 498 MobiDBLite consensus disorder prediction 305 337 - -
Tpr4g0104 498 Pfam Vta1 C-terminal domain 455 492 IPR041212 -
Tpr4g0104 498 Gene3D Immunoglobulin FC, subunit C 454 493 - -
Tpr4g0104 498 Pfam Vta1 like 13 148 IPR039431 -
Tpr4g0104 498 MobiDBLite consensus disorder prediction 264 381 - -
Tpr4g0104 498 MobiDBLite consensus disorder prediction 406 451 - -
Tpr4g0104 498 Gene3D - 5 152 IPR023175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0104 7 118 Glycosyltransferase AT2G31960 28.099 7.23e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0104 K12199 - gmx:100783739 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0104 4 1219563 1223087 Tpr4g0104 4 1219563 1223087 ECH