LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0045	ATGGAGGACATGGATGATGAAATCGATGACGTTCCTCAGGTTTACATGGCCTGCATACAAAACGGTCATAGAATTGGAGTTTCTTATTATGATTCCAGCCTCCGACAACTAAATGTGCTTGAAGCTTGGGATGATGGGGACAAAGGTTTTTCGGTTATTGATCTGGTGAAATTTCAAGCAAACCCTCTGGTCATATACACAAGCACTAAATGTGAAGAATCTTTCTTGGCTGCTCTGCAACGAAGTGATGAAGTAGCTGAGGCTCTTACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCACAGATTAATTTACCTTCGGGTGGCGGGAATGGATGACGGATTAGACGTCAAGGAGAGGATTTACTTTTTGAGTTCCATGATGGACATGGGAAGTGAAATACAAGTTCGTGCTAGTGGGGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGACACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTATCAAGCTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAGATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATGAATAAGTGTGTCACACCAATGGGTAGACGTCTTTTGAGACAGTGGTTCTTGAGGCCCATACTTGATCTTGAAGTTCTAAACTACCGCTTAAATTCTATATCTTTCTTTCAATGCTCAGAAGAACTTGTTGTTTCTTTACGTGAAACCCTGAAATCTGTGAAAGACATACCCCACTTGCTTAAGAAATTTGACTCTCCAAGCTCCATATGCACTAGCAATGATTGGGCAGCACTTCTGAAGAGCATCAGTGCACTATTGCATATAAACAAGATATTTGAAGTTGGAATTTCTGAAGGTCTTCATGAAGAATTGAAGTACTTGAACTTGGATATTGTTGAGATGGCAAATTCATGCATAACAACGGAGCTTGCTTATGTCTATGAGCTGATAATTGGGGTTATTGATGTAAATAGAAGTAAAGAGAAGGATTATATGACAGTGGTGAAAGAAGGTTTCTGTGATGAGGTTTCATCATTGGAACTTGCACAACTCCCTGATCTATGCAAGGACAAGTTTGTTCCATGTATTGTTTATATACAGCAAATAGGATATTTAATGTGCATCTTTGAAGAAAAACTTGAAGAAGCTACTCTGGAGAAACTTATAGAATGGGAATACACTTTTTGTGATGAAGATGGAGAGACGAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGACAATCTTCTAGGAGATATCTATCATAAAATTCTAGATATGGAGAGGGCGATCACTAGAGACTTGTTTTCACATGTATCATTGTTCTCAACCCATTTGATAAAGGTTTCAACTTTTGCGGCTGAACTGGACTGCTTTTTGTCAATGGCTTTGGTTGCTCGACAGAACAATTATGTCAGACCTTTATTGACCGAAGAAAACATGCTCGATATAAAAAATGGAAGGCATGTTTTACAGGAAATGACTGTAGACACATTTATTCCTAACAATACTAAGATTTTTCATGATGGAAGAGTTAATATCATTACTGGTCCTAACTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTATAATTGTTTACCTGTCCCACATCGGTAGTTTTGTACCAGCTGATGCAGCAACTGTTGGGCTGACAGATAGAATATTTTGTGCGATGGGAAGCAGGCTTATGACAGCAGAACAATCAACATTTATGATTGATCTACATCAAATTGGGATGATGCTGAGGCATGCTACTTCACGATCTCTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGTGTTGGTCTGCTTGCAGGGGCCATAAATCACTTTATCACATGTGATGAACCTCCAAAGGTTTTTGTGTGCACTCATCTGATGGATTTATTGCATGGGTGTTCTTTGACCAAGTCTGAGCAGATTAAGTTCTACACAATGAGTATACTGAGGCCTGAAGACATTTCAACTCAAATGGAAAACATCGTATTTTTATATAGGCTTGTCCCAGGGCATGTGCATCATAGCTATGGGCTGCACTGTGCGTTGCTTGCAGGCGTGCCAGACGAAATTATAAAAAGAGCAGAAGTTGTGTTGGATGCTGTATCACAAAACAATTGTGTTGAGAGGTTATGCAATGAGAACATCTCCGCTCAAGATGATGAATACAAGGATGCCATGGAGAAATTGTTGACATTCGATATTGACAATGGCGACTTAAACCTTTTTTTCGAGGAGATATTCTCTAGTTCCTAA	2379	0.3901	MEDMDDEIDDVPQVYMACIQNGHRIGVSYYDSSLRQLNVLEAWDDGDKGFSVIDLVKFQANPLVIYTSTKCEESFLAALQRSDEVAEALTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLDVKERIYFLSSMMDMGSEIQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFIKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRQWFLRPILDLEVLNYRLNSISFFQCSEELVVSLRETLKSVKDIPHLLKKFDSPSSICTSNDWAALLKSISALLHINKIFEVGISEGLHEELKYLNLDIVEMANSCITTELAYVYELIIGVIDVNRSKEKDYMTVVKEGFCDEVSSLELAQLPDLCKDKFVPCIVYIQQIGYLMCIFEEKLEEATLEKLIEWEYTFCDEDGETKRYFYRTPKTRELDNLLGDIYHKILDMERAITRDLFSHVSLFSTHLIKVSTFAAELDCFLSMALVARQNNYVRPLLTEENMLDIKNGRHVLQEMTVDTFIPNNTKIFHDGRVNIITGPNFSGKSIYIKQVAIIVYLSHIGSFVPADAATVGLTDRIFCAMGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGVGLLAGAINHFITCDEPPKVFVCTHLMDLLHGCSLTKSEQIKFYTMSILRPEDISTQMENIVFLYRLVPGHVHHSYGLHCALLAGVPDEIIKRAEVVLDAVSQNNCVERLCNENISAQDDEYKDAMEKLLTFDIDNGDLNLFFEEIFSSS*	793

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0045	792	PIRSF	MSH2	397	778	IPR011184	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	PIRSF	MSH2	2	392	IPR011184	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	626	642	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	Pfam	MutS domain III	191	499	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	Gene3D	-	185	402	-	-
	Tpr4g0045	792	SMART	DNAend	212	531	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	507	743	IPR027417	-
	Tpr4g0045	792	CDD	ABC_MSH5_euk	519	728	-	-
	Tpr4g0045	792	SMART	mutATP5	546	741	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	PANTHER	MUTS PROTEIN HOMOLOG 5	21	784	-	-
	Tpr4g0045	792	Pfam	MutS domain V	550	741	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Tpr4g0045	792	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	21	784	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
	Tpr4g0045	792	Gene3D	-	507	777	IPR027417	-
	Tpr4g0045	792	SUPERFAMILY	DNA repair protein MutS, domain III	187	506	IPR036187	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0045	Tpr-Chr4	453188	466696	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0045	K08741		-	gmx:100797567	1370.53

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g0045	4	453188	466696	Tpr4g0045	4	453188	466696	ECH