Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4608 ATGGATGGTTATGAAGCTACTAGGATTGTTTTTCAAAGGATCCAATCCATGGACCCTGAAAATGCTTCTAAAATAATGGGTTTACTTCTTCTTCAAGACCATGGTGAAAAAGAAATGATTAGATTAGCTTTTGGTCCAGAATCACTTCTTCATTCAGTGATTTTCAAAGCTAGAAATGAGTTAGGATTAAGTTTGAATTCACCTTCAACACCTCAATCACAATCTTCACCTTTTCATTCAAGTAATCCAGTTCCTATTTCAAGACAAAATTCAAACTCTTCAAGACTTATAAATAGTGGCATGACTCTTCCTTCACCTCTTAGTATTCCAAATCCATCTTCAAATTCAGCTTCTTGGGCTGATGATTCTCCTTCCATGAATTCCATGAATAATAGTTCTTCACCTTTTTATGGTAATGGAGGAGTTTCTGCTGATTCAATTGATGAGTTTCAACTTCAAGAACAACTTTCTTTTCTTAATGATGGAAACTCTTCACCTTCACTTGTTTCAAAGAATTCTGATTTGTTTTACTCTCAATCAGAGTTATGTTCTAGTCCTAATAGTGGAAGTATTGGTAATGGTGTTGACCCTTCATTTTTTCCATCTTATGGTTATGGAGGTTCACTTCATAGAAGAAGTTGTTCTGTGAATGATGCTGCATGTTTAGTTTCTGAGGATCCTAATTCTGGTTTAGGTTGGAAACCATGTCTTTACTATGCTAGAGGTTATTGCAAGAATGGTACTAGTTGTAGGTTCCTTCATGGTGGATTTGGTGATGGTGGTGAAGGTGTTGGTTCAATGGTTGGTTCTCCTAATAAGATTGAGATGTTGGATCAGTGTCATGAACAGCTTCTTAGATCTAAATCTCTTCAACAACAAAGATTAGCTGCAGCTTCTCAACTTATGGCTACTTCATCTTTTCCTTACTCTCCTAAGAGCATGAGTTTGCTTCTTCAACACCAACAAAGTGATGCTCAAAGAGCTGCAGCTGCAGCACTTATGATGAATGAGGATTTTCACAAATTTGGCAGGTCAAGGTTGGAAAGAAATGATTTTCCTTTGAGCAATATTGGAATGATGAATCCAGCTTCTAGGCAGATATACTTGACTTTTCCAGCTGACAGTACTTTTAGAGAGGAAGATGTGTCAAACTATTTCAGCATTTATGGACCTGTTCAAGATGTGAGGATTCCATATCAGCAAAAAAGGATGTTCGGATTTGTTACCTTTGTTTATCCGGAGACGGTGAAACTCATTTTAGCTAAAGGAAACCCTCATTTTGTTTGTGATGCTAGAGTGCTTGTTAAGCCTTATAAGGAGAAAGGCAAAGTCCCAGACAAGTACAGAAAGCAGCAGCAAATGGATAGGGGAGACTTTTCTCCTTGTGGTACACCTACTGGACTTGATGGCCGAGATCCATTTGATCTTCAAGTCGGGGGGAGAATGTACTACAACACTCAAGACATTCTTTTGAGGAGGAAGTTAGAGGAACAAGCTGAATTGCAACAAGCTCTTGAGCTTCAAAGTAGAAGACTTATGAGTCTTCAACTTCTTGACATCAAAAAGCAACACCAACGCGCCCTTTCGACCGGAAGTCCAATTCCTTCGCCAACTCATTCTCCCAACATGTTCAATCATAACTTTCCTCTTTCTTCATTTCACAGCAGCTCAGAAAGCCAAGAGGATAATGGCTCAGGCTCAGGTTCAGGTTCCGGTTCTGCTAGCTCAGCATCAATTCCTATTGATCAACAAGTAAACATTTCTGTTGGCAAAGAAGTAGCAGTCAATGGAGGAGAGAATGGAAATAGTGAAGCAAGTGGCAAACAAAGCTCAAATCATGAAGATAGTGATTTACAAGAAAGCTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACTAAAGCTATTGGTGACTACATGGCTGCATTTAACAATGGATCTAACGAGGCCATTGATTCAGATGTATCTACCAATTCCAAATTTAGTACTAACACACTTCTTCCTCCGGCATCTCCTCTCGATATGGGATCTTTCAAATCCTATAACTGCCAAATTCCAAGATTCTCTTCTGGCCATGGAACCATTGGAATGCTCGCCGGTACCGGTGGACCTATCGGCATTTAG 2130 0.3948 MDGYEATRIVFQRIQSMDPENASKIMGLLLLQDHGEKEMIRLAFGPESLLHSVIFKARNELGLSLNSPSTPQSQSSPFHSSNPVPISRQNSNSSRLINSGMTLPSPLSIPNPSSNSASWADDSPSMNSMNNSSSPFYGNGGVSADSIDEFQLQEQLSFLNDGNSSPSLVSKNSDLFYSQSELCSSPNSGSIGNGVDPSFFPSYGYGGSLHRRSCSVNDAACLVSEDPNSGLGWKPCLYYARGYCKNGTSCRFLHGGFGDGGEGVGSMVGSPNKIEMLDQCHEQLLRSKSLQQQRLAAASQLMATSSFPYSPKSMSLLLQHQQSDAQRAAAAALMMNEDFHKFGRSRLERNDFPLSNIGMMNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQMDRGDFSPCGTPTGLDGRDPFDLQVGGRMYYNTQDILLRRKLEEQAELQQALELQSRRLMSLQLLDIKKQHQRALSTGSPIPSPTHSPNMFNHNFPLSSFHSSSESQEDNGSGSGSGSGSASSASIPIDQQVNISVGKEVAVNGGENGNSEASGKQSSNHEDSDLQESLEHNLPDSPFASPTKAIGDYMAAFNNGSNEAIDSDVSTNSKFSTNTLLPPASPLDMGSFKSYNCQIPRFSSGHGTIGMLAGTGGPIGI* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4608 709 SMART rrm1_1 366 436 IPR000504 GO:0003723
Tpr3g4608 709 MobiDBLite consensus disorder prediction 66 88 - -
Tpr3g4608 709 CDD RRM_AtC3H46_like 367 436 IPR034365 -
Tpr3g4608 709 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 697 - -
Tpr3g4608 709 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Tpr3g4608 709 MobiDBLite consensus disorder prediction 552 585 - -
Tpr3g4608 709 Gene3D - 362 461 IPR012677 -
Tpr3g4608 709 SUPERFAMILY RNA-binding domain, RBD 377 454 IPR035979 GO:0003676
Tpr3g4608 709 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Tpr3g4608 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 255 IPR000571 GO:0046872
Tpr3g4608 709 SUPERFAMILY CCCH zinc finger 233 255 IPR036855 GO:0046872
Tpr3g4608 709 MobiDBLite consensus disorder prediction 105 125 - -
Tpr3g4608 709 MobiDBLite consensus disorder prediction 599 621 - -
Tpr3g4608 709 SMART c3hfinal6 232 256 IPR000571 GO:0046872
Tpr3g4608 709 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 422 IPR000504 GO:0003723
Tpr3g4608 709 Coils Coil 491 511 - -
Tpr3g4608 709 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4608 Tpr-Chr3 51175862 51180840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4608 - - gmx:100801341 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4608 3 51175862 51180840 Tpr3g4608 3 51175862 51180840 ECH