Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4558 ATGGTTGAAAATGACTATTTTCCTCCTTGGTTTAGTGTGGCTCCAATGATGGATTGGACAGACAATCATTATAGAACTCTTGCACGCCTCATGTCGAAACATGCTTGGCTTTATACTGAGATGCTTGCTGCTGAAACAATTGTTTATCAAAAGGGTAATCTGGACAGATTCTTAGCATTTTCTCCAGACCAACATCCTATTGTGCTTCAAATTGGAGGCAGTAATTTAGAGAATTTGGCGAAAGCAACTGAACTGGCTGATGCTTACGGCTATGATGAGATAAACCTCAATTGTGGGTGCCCTAGTCCTAAAGTAGCAGGACGTGGATGCTTTGGTGCACGCCTTATGCTTGAACCAAAGTTCGTTGCTGAGGCTGTTTCAGTAATTGCTGCCAATACAAATGTACCTGTCAGTGTCAAATGTCGAATCGGTGTGGATGATCATGATTCATACAATGAACTATGTGATTTCATTTACAAGGTTTCTTCTCAATCACCTGCTCGGCATTTCATTATTCACTCCAGAAAGGCACTGCTGAATGGCCTCAGTCCTGCTGAAAATCGGAGTATTCCTCCACTGAAATACGAATATTTTTATGGCCTCTTGCGCGACTTTCCTGACTTAACATTTACAATCAATGGTGGCATTACTGGTATTGATGAGATCAATGCAGCTCTAAAGACTGGTGCTCATGGTGTTATGGTTGGACGTGCTGCTTATCATAACCCTTGGCATCTTTTGGGAAATGTTGATTCTGCAATTTATGGTGTACCAAGCATTGGTCTTACACGTCGTCAGGTCATTGAGAAATATCAAGTATATGGAGACTCTGTGTTGCTACAATATGGACTTCGACCGACTGTGCGAGACATTGTGAAGCCTTTACTTGGTTTTTTCCATGGTGAGCCTGGGAATGGACTTTGGAAGCGCAAAGCAGATTCCGCTTTCCACACTTGCACGACAATAAAATCATTTCTTGAAGAAACTCTTGTAGCAATTCCAGATTCGGTCTTGGATTCGTCGTTTGCGAAAGCACCACTTGGCCGTGAAGATATTTTTGCTAACATTGGCAGTTTAATGCCTCCACCATACAGAACAAGAGATGAAGATGCTGTATAA 1119 0.4209 MVENDYFPPWFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMLAAETIVYQKGNLDRFLAFSPDQHPIVLQIGGSNLENLAKATELADAYGYDEINLNCGCPSPKVAGRGCFGARLMLEPKFVAEAVSVIAANTNVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPARHFIIHSRKALLNGLSPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITGIDEINAALKTGAHGVMVGRAAYHNPWHLLGNVDSAIYGVPSIGLTRRQVIEKYQVYGDSVLLQYGLRPTVRDIVKPLLGFFHGEPGNGLWKRKADSAFHTCTTIKSFLEETLVAIPDSVLDSSFAKAPLGREDIFANIGSLMPPPYRTRDEDAV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4558 372 PIRSF Dus 1 344 IPR001269 GO:0008033|GO:0017150|GO:0050660
Tpr3g4558 372 Gene3D - 260 327 - -
Tpr3g4558 372 SUPERFAMILY FMN-linked oxidoreductases 10 311 - -
Tpr3g4558 372 Pfam Dihydrouridine synthase (Dus) 13 327 IPR035587 -
Tpr3g4558 372 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 1 372 IPR004653 GO:0002943|GO:0017150
Tpr3g4558 372 PANTHER TRNA-DIHYDROURIDINE SYNTHASE 1 372 - -
Tpr3g4558 372 ProSitePatterns Uncharacterized protein family UPF0034 signature. 94 113 IPR018517 GO:0008033|GO:0017150|GO:0050660
Tpr3g4558 372 CDD DUS_like_FMN 11 244 IPR035587 -
Tpr3g4558 372 Gene3D Aldolase class I 7 250 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4558 Tpr-Chr3 50697309 50704935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4558 K05539 - gmx:100785422 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4558 3 50697309 50704935 Tpr3g4558 3 50697309 50704935 ECH