Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4454 ATGAAAATGGCGAGCGATGACAATCTAAAGACATGGGTATCAGATAAGTTGATGTCACTACTGGGATATTCTCAGCCCACGGTTGTACAGTACATGATTGGACTATCCAAGCAAGCTACTTCACCAGCTGATTTAGTAGGAAAACTAGTGGAGTTTGGGTTCTCAACAACAGACACCCGAACATTTGCAGAAGAAATCTTCTCAAGAGTTCCTCGTAGATCGTCCGGCTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGCAATGCTGGCAAGGAAGCAGGGGACTTACACAATTTTGAAGGATGATGACAATATCGACGATGACCATACTGTTGGTGGTGATGATAAATCGTCGATAACCACTGCTTCTACATCTAGAAAGCCAGACAGTCATAAAAAACGTTTCAGGAAGAAAACTGAAGTTCAAGATGATCAAGATGATGAGGTAGTTTCAAGGAGAGAAAGGGAAAGACAAGTCAAGAGAAGAACTTCCCATGATGAAGAGAGTGGTTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGTGCAGCATATGAGAGAAAGAGATGCTGCAGCAACACGGAAGTTGACTGAACAAAAATTAACTCGAAAGGAGGCAGAAGAAGCAATTCGAAGATCTAATGCTGCAGAGCAGGATGATATGCATGCTTTGAGAAAGTATTCAAGGCAAGAATATTTAAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATCTATTTGACGGTGTGAAGCTTTCAGAAGTTGAACAGCGTGAGATAAGGCACAAGAAAGAGCTATATGAACTTATAAAAAAGCGGTCAGAGGAGGATGACAATGTGAATGAGTATAGAATGCCAGATGCTTATGATCAGGAAGGCGGCGTTAATCAAGAAAAAAGATTTTCTGTGGCTATGCAGCGTTACAGGGATACACATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATCGGAAAGGCAACTCTGAATTATGGTTCCAAAAATAAAAAACAAGCCTCTGATGATTACCAGTTTGTCTTCGAGGATCAGATTGATTTTATTAAGGCATCAGTGATGGATGGAGATAAGTTTGATTACGATGAGATGGCAGATTCAATTGAAAAGTCCAAAGCAAAGTCAGAATCAGAGGCACTTCAGGCGGAGAGGAAAAAATTACCAATTTATACTTATCGGGATGAATTGCTCCAAGCTGTTCAGGACCACCAGGTACTTGTAATTGTTGGTGAAACCGGTTCTGGAAAGACTACACAAATTCCCCAATATCTCCATGAAGCTGGCTACACAAAACATGGAATGATTGCATGTACTCAGCCACGTCGTGTTGCTGCTATGAGTGTGGCTGCTCGAGTTGCTCATGAATTAGGAGTTAAACTAGGGCATGAGGTCGGGTACTCCATCCGTTTTGAGGATTGCACATCAGACAAGACTATTCTGAAATATATGACAGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACTGATATTTTGTTTGCATTGGTAAAGGATATTTCTCGCTTCCGACCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAAAAGTTCAGTGATTACTTTGATTCTGCTCCAATATTCAAAATTCCAGGGAGAAGGTATCCGGTTGAAATACACTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCAGCTATTGTCACAGCGCTTCAAATCCATGTTACTCAACCTCCTGGAGATATATTGATATTCCTTACTGGTCAAGAAGAAATTGAAACGGCCGAAGAAATCTTGAAGCATCGAACTAGGGGCTTAGGGACCAAAATTGCTGAATTAATTATATGTCCTATATATGCCAATCTACCAACTGAATTACAAGCTAAAATATTTGAACCAACTCCTGAAGGGGCACGGAAGGTTGTCCTTGCTACCAATATTGCAGAAACATCATTGACAATTGATGGAATAAAGTATGTCATTGATCCAGGATTTGTTAAAATGAAAAGTTATAATCCAAAGACAGGAATGGAGTCTTTACTAGTGTCTCCCATCTCAAAAGCCTCAGCAATGCAACGAGCCGGTCGATCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGGTTGTATACTGCATACAATTATCAAAATGATTTGGATGATAACACTGTACCAGAAATACAGCGAACTAACCTTACAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTGTTGCACTTTGAATTTATGGATCCTCCACCCGCTGAGGCTTTATTGAAAGCCCTGGAGCTTCTATTTGCTTTAAGTGCTTTAAATAAGCTTGGGGAGTTAACTAAGGTAGGAAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGTTTCAGAAAAATACAAGTGTTCAGAAGACATCATTTCCATTGCTGCTATGCTTTCTATTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTGCATGCAGACAATGCAAGGCTGAATTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAATTCTTGGAAAGAGACCAACTATTCAACACAATGGTGTTATGAAAATTACATCCAGGTTAGAAGCATGAAAAGGGCAAGAGACATCCGTGATCAGCTTGCAGGTCTTTTAGAGAGGGTTGAAATCGAGCTTACTACAAATACCAATGATTTAGATGCCATAAAGAAATCTATAACATCTGGATTTTTCCCACACTCTGCAAAATTGCAAAAAAGTGGAGCCTATCGGACACTTAAACATGCACAGACTGTTCACATACATCCTAGTTCGGGGTTGGCACAGATTCTTCCAAGATGGGTTGTGTACCATGAACTTGTACTCACAACCAAGGAATATATGAGACAGATCACGGAGTTAAAGCCAGAGTGGTTGTTGGAGATTGCCCCTCACTATTACCAGCAAAAGGATGTTGAAGACACGAGTTCCAAGAAAATGCCTCGTGGAGAAGGACGTGCAGGTGCAACATAG 3168 0.4037 MKMASDDNLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGFSTTDTRTFAEEIFSRVPRRSSGLNQYQKQEREAAMLARKQGTYTILKDDDNIDDDHTVGGDDKSSITTASTSRKPDSHKKRFRKKTEVQDDQDDEVVSRRERERQVKRRTSHDEESGSESEEERLKDQREKEELVQHMRERDAAATRKLTEQKLTRKEAEEAIRRSNAAEQDDMHALRKYSRQEYLKKREEKKLEELRDDIEDEQYLFDGVKLSEVEQREIRHKKELYELIKKRSEEDDNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLNYGSKNKKQASDDYQFVFEDQIDFIKASVMDGDKFDYDEMADSIEKSKAKSESEALQAERKKLPIYTYRDELLQAVQDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAHELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFALVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQPPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNYQNDLDDNTVPEIQRTNLTNVVLTLKSLGIHDLLHFEFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTTNTNDLDAIKKSITSGFFPHSAKLQKSGAYRTLKHAQTVHIHPSSGLAQILPRWVVYHELVLTTKEYMRQITELKPEWLLEIAPHYYQQKDVEDTSSKKMPRGEGRAGAT* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4454 1055 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 954 1031 IPR011709 -
Tpr3g4454 1055 SMART ha2_5 805 897 IPR007502 GO:0004386
Tpr3g4454 1055 Pfam Helicase conserved C-terminal domain 616 744 IPR001650 -
Tpr3g4454 1055 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 529 538 IPR002464 -
Tpr3g4454 1055 Coils Coil 203 223 - -
Tpr3g4454 1055 SMART ultradead3 412 596 IPR014001 -
Tpr3g4454 1055 Gene3D - 375 589 IPR027417 -
Tpr3g4454 1055 PANTHER ATP-DEPENDENT RNA HELICASE 114 1052 - -
Tpr3g4454 1055 Coils Coil 923 943 - -
Tpr3g4454 1055 Coils Coil 234 261 - -
Tpr3g4454 1055 MobiDBLite consensus disorder prediction 1036 1055 - -
Tpr3g4454 1055 MobiDBLite consensus disorder prediction 110 232 - -
Tpr3g4454 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 785 IPR001650 -
Tpr3g4454 1055 MobiDBLite consensus disorder prediction 136 232 - -
Tpr3g4454 1055 CDD SF2_C_RHA 591 752 - -
Tpr3g4454 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 938 IPR027417 -
Tpr3g4454 1055 Coils Coil 392 412 - -
Tpr3g4454 1055 Gene3D - 789 947 - -
Tpr3g4454 1055 PANTHER OS05G0389800 PROTEIN 114 1052 - -
Tpr3g4454 1055 Gene3D - 590 765 IPR027417 -
Tpr3g4454 1055 Pfam Helicase associated domain (HA2) 806 880 IPR007502 GO:0004386
Tpr3g4454 1055 SMART helicmild6 636 744 IPR001650 -
Tpr3g4454 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 587 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4454 Tpr-Chr3 49578706 49595511 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4454 K12813 - gmx:100809559 1769.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4454 3 49578706 49595511 Tpr3g4454 3 49578706 49595511 ECH