Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4453 ATGGGTTGCGTCGTTAGCAAAAACGCTGAGACCAAAGCCACTCGAACCTCTCGCTGGCGATCCACTGGCATTGTTGCTCTTCGCGATTCCAAATTGAAGACTTTTCCAGATGAAATTCTTGATTTAGACCGATCCGTGCGTACTCTTGACTTAACACATAATCGAATAGTTGACATTCCCGTGGAAATTAGCAAATTGATTAATATGCAGCGCCTGATATTAACGGAAAACCTCATTGATAGACTGCCAGTGAATTTGGGAAAACTCCAATCTCTTAAACTCGTGAATCTTGATGGAAATCGAATTACTTCCTTGCCCGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCGGCAACTATTGGCAGTTTGAGAAACCTATTGATTTTAAATGTCTCAAATAACAAGTTACAGTCTCTTCCAGAATCTATTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCCAATGATAATCTTATTGAAGATCTTCCTTCTTCAGTGTGCAATCTCTCTCACTTGAAGTCACTGTGCTTAGACAACAATAATGTGAAGCAGATACCTCTGAATCTTTTGAAAGATTGCAAAGCTCTTCAGAACATATCGCTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGATGGGTTTCAAGAGTTTGAAGAAAGAAGGAAAAAGAAATTTGACAAACAAATTGATTCAAATGTGATGATTGGTTCCAAAGGTCTCGATGAGGGTGTCGATCTATGA 786 0.3944 MGCVVSKNAETKATRTSRWRSTGIVALRDSKLKTFPDEILDLDRSVRTLDLTHNRIVDIPVEISKLINMQRLILTENLIDRLPVNLGKLQSLKLVNLDGNRITSLPDELGQLVRLERLSISGNLLTSLPATIGSLRNLLILNVSNNKLQSLPESIGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLHGNPISMDQFQQMDGFQEFEERRKKKFDKQIDSNVMIGSKGLDEGVDL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4453 261 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 2 253 - -
Tpr3g4453 261 SMART LRR_typ_2 44 65 IPR003591 -
Tpr3g4453 261 SMART LRR_typ_2 112 134 IPR003591 -
Tpr3g4453 261 SMART LRR_typ_2 181 204 IPR003591 -
Tpr3g4453 261 SMART LRR_typ_2 135 158 IPR003591 -
Tpr3g4453 261 SMART LRR_typ_2 66 88 IPR003591 -
Tpr3g4453 261 SMART LRR_typ_2 89 111 IPR003591 -
Tpr3g4453 261 ProSiteProfiles Leucine-rich repeat profile. 183 203 IPR001611 GO:0005515
Tpr3g4453 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Tpr3g4453 261 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Tpr3g4453 261 SUPERFAMILY L domain-like 23 221 - -
Tpr3g4453 261 Gene3D Ribonuclease Inhibitor 5 243 IPR032675 -
Tpr3g4453 261 SMART LRR_bac_2 160 177 - -
Tpr3g4453 261 SMART LRR_bac_2 181 200 - -
Tpr3g4453 261 SMART LRR_bac_2 135 154 - -
Tpr3g4453 261 SMART LRR_bac_2 112 131 - -
Tpr3g4453 261 SMART LRR_bac_2 89 108 - -
Tpr3g4453 261 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 253 - -
Tpr3g4453 261 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515
Tpr3g4453 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Tpr3g4453 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4453 Tpr-Chr3 49565118 49571179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4453 46 219 Receptor kinase-like Gene Family AT5G46330 32.195 1.39e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4453 - - gmx:100807758 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4453 3 49565118 49571179 Tpr3g4453 3 49565118 49571179 ECH