Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4448 ATGTTTGGTTCAAAGAAAACATCTCCTGTGAAAGATGCTAAACCTAGGTCTAAGCATAATAACCCCTTTGATTCTGATGAAGACAAAAAGGATAACAAAAAGTATAATTCTTCGAAGAAGACGTCTTCGGAATATAACTTAGTTCAGGGAGAAACTAATACCAATCCCTTTGATGATGTTGATACTCGTGGTCACTCTTCATCGTCTTCTTATGCTCCGTCGTACGGCAATCGACACATGTATAAGAATGATTTCCGTGAATCTGGAGGATTAGAGAGTCAATCAGTGGAGGATTTGGAGAACTATGCTGTTTATAAGGCTGAGGAGACTACAAAATCGGTAAACAATTGTCGGAAGATAGCAGAGGAAATGCGAGAGGAAGCCAGCAATACTTTGGTTATGCTGCATCATCAGGGCGAGCAGATTACAAGGAGTCATGATATTGCTGCTGGCATTGACCATGATTTAAGCAGGGGAGAAAAACTTTTGGGAAGTCTTGGTGGAATATTCTCCAAAACATGGAAACCAAAGAAGACAGGCGCAATAAAAGGCCCTACAATATTTGGAGATGATCCAGTCCGAATAAGCGCCAACCACTTGGAGCAACGAGAGAAGCTAGGATTGAATTCTGCCCCTAAAGGACAGTCAAAGCCAAGGAAAACACTTTCTGAGCCAACAAATGCATTTGAAAGAGTCGAGGTTGAGAAATCAAAACAAGATGATGCACTGTCAGATATAAGTGATCTTTTGGGAGAACTTAAGGGCATGGCTATTAACATGGGAACTGAAATTGAGAGGCAAACCAAAGCTATAGATGGATTTGAAAAAGATACCGAGAAGTTGAATATCCGTATGAATGGCGCCAATCAACGTACTCTTCATTTACTTAGGAAATAG 897 0.4058 MFGSKKTSPVKDAKPRSKHNNPFDSDEDKKDNKKYNSSKKTSSEYNLVQGETNTNPFDDVDTRGHSSSSSYAPSYGNRHMYKNDFRESGGLESQSVEDLENYAVYKAEETTKSVNNCRKIAEEMREEASNTLVMLHHQGEQITRSHDIAAGIDHDLSRGEKLLGSLGGIFSKTWKPKKTGAIKGPTIFGDDPVRISANHLEQREKLGLNSAPKGQSKPRKTLSEPTNAFERVEVEKSKQDDALSDISDLLGELKGMAINMGTEIERQTKAIDGFEKDTEKLNIRMNGANQRTLHLLRK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4448 298 SUPERFAMILY SNARE fusion complex 94 164 - -
Tpr3g4448 298 SMART tSNARE_6 99 166 IPR000727 -
Tpr3g4448 298 SMART tSNARE_6 228 295 IPR000727 -
Tpr3g4448 298 MobiDBLite consensus disorder prediction 9 38 - -
Tpr3g4448 298 CDD SNARE_SNAP25N_23N_29N_SEC9N 101 165 IPR044766 GO:0005484|GO:0031201
Tpr3g4448 298 SUPERFAMILY SNARE fusion complex 231 294 - -
Tpr3g4448 298 MobiDBLite consensus disorder prediction 204 226 - -
Tpr3g4448 298 Gene3D - 220 298 - -
Tpr3g4448 298 Coils Coil 107 127 - -
Tpr3g4448 298 Gene3D - 90 167 - -
Tpr3g4448 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Tpr3g4448 298 MobiDBLite consensus disorder prediction 1 77 - -
Tpr3g4448 298 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 298 - -
Tpr3g4448 298 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 298 - -
Tpr3g4448 298 MobiDBLite consensus disorder prediction 39 76 - -
Tpr3g4448 298 CDD SNARE_Qc 238 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4448 Tpr-Chr3 49527169 49531850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4448 K18211 - gmx:100806698 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4448 3 49527169 49531850 Tpr3g4448 3 49527169 49531850 ECH