Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4423 ATGGATGAAGCCATTTGGGTTTTCAATAACCTAAACCCTATTTTACCTACATTACGCGCCTGCAATGCGCTTCTTCATTCGTTAGTAAGAAATTCAAGGTTTGATTCCATGTGGGAGGTCTATAATAACATGGTGTCACGCGGGTTTTCGCCTACTGTAATCACATATGGAATTTTATTGAACTGTTGTTGTAATCAGGGTGATTTTAGTAATGCCCGGAAGGTGTTTGATGAAATGTTGCAAAGAAGAATTGAAGCTAATGTGGTGGTTTACACTATTCTTATTCGTGTTTATTGTAATGAGGGTGAAATGGTAGAAGCTGAGAGGGTTTTTAAATTGATGAGGGAAAATGGGGTTGATCCGAATTTGTATACTTATGTTACTCTCATTGATGGGTATTGCAAAATGGGTAATGTTAGACGTGTTTTTGAATTATATAGTGATTTGCTATGGAATGGTTTGCATCCTGATGTTGTGACATTTGCGAATTTGGTTGATGTTTTGTGTAAGGTGGGTGATTTGAAGGCTGCACGAAATTGCTTTGTTTATATGGATAAATTTGGTGTATTTCCTAATTCATATGTTTATAATTGTTTGATTGATGGTTATTGTAAGGCGGGGGATTTGGTTGAAGCAATGCGATTGCGAGTTGAAATGGAACGGAATGGAGTTTCCGGTGATGTTTTTACATGCAGTATTCTTGTTAAGGGTTTATGTGACTTTGGTAGGTTTGAGGAAGCTAAGGATTTGATGGAGGAGATGGGAAAAGCAGGGGTTTTTGCTAATGTTGTGACTTGCAATGTGGTTATTGATGGATACTGCAAAATGGGTGATATGGAGAAGGCTATCGAGGTGTGTTCACAATTGACTGAAAGGAAGATAGAACCCAATGTGATCACTTTTTCTACATTGATTGATGGGTTTTGCAAGAAAGGGAACATAAAAGCTGCTATGGGGTTATATACAGAAATGGTTATCAAAGGTCTTGTGCCTGATGTGGTGACTTACACAGCTTTAATCGATGGCCATTGCAAGGTTGGAAACAACAAAGAGGCTTTTGAACTGCATAAGGAGATGCTGGATGCGGGACTAACGCCGAATGCATTGACAGTTACTTGTTTGATTGATGGCCTTTTGAAAGATGGAAGGACTTACCGTGCAATCAAACTTTTCTTGGAGAAAACTGGAGTTGGTTGCCTTGGAAGTAAAATGGATCATAGTGGGTTGTGTTCTCGTAATGATGTTATGTATGCCGCTTTAATTCAAGGTTTATGTAAATATGGGCACGTATTTAAGGCCACTAAGTTTTTTGCAGAAATGAGAGGTAGTGGTTTCAAACCAGACATGGGGCTTTATGTTATCATGTTGGAGGCACATTTTCGATCCAAGCACATTATTGATGTAATGATGTTGCATGCAGACATGCTGAAGATGGGTGTTATGAGAAATAGTTCTATATATCGTGTATTGTCTAGGGGCTATAAAGAGAATGGAGATCCTAAACCAGCTCAAATGTGTTTTGAACATTTAATGGAATATGACATTCAGTATCATGAATCATGA 1563 0.3826 MDEAIWVFNNLNPILPTLRACNALLHSLVRNSRFDSMWEVYNNMVSRGFSPTVITYGILLNCCCNQGDFSNARKVFDEMLQRRIEANVVVYTILIRVYCNEGEMVEAERVFKLMRENGVDPNLYTYVTLIDGYCKMGNVRRVFELYSDLLWNGLHPDVVTFANLVDVLCKVGDLKAARNCFVYMDKFGVFPNSYVYNCLIDGYCKAGDLVEAMRLRVEMERNGVSGDVFTCSILVKGLCDFGRFEEAKDLMEEMGKAGVFANVVTCNVVIDGYCKMGDMEKAIEVCSQLTERKIEPNVITFSTLIDGFCKKGNIKAAMGLYTEMVIKGLVPDVVTYTALIDGHCKVGNNKEAFELHKEMLDAGLTPNALTVTCLIDGLLKDGRTYRAIKLFLEKTGVGCLGSKMDHSGLCSRNDVMYAALIQGLCKYGHVFKATKFFAEMRGSGFKPDMGLYVIMLEAHFRSKHIIDVMMLHADMLKMGVMRNSSIYRVLSRGYKENGDPKPAQMCFEHLMEYDIQYHES* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat 410 441 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat 152 184 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat family 331 380 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat family 87 135 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat family 262 310 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat family 191 240 IPR002885 -
Tpr3g4423 520 Pfam PPR repeat family 20 65 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Tpr3g4423 520 PANTHER ATPASE EXPRESSION PROTEIN 3 1 499 - -
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 292 397 IPR011990 GO:0005515
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 1 80 IPR011990 GO:0005515
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 399 520 IPR011990 GO:0005515
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Tpr3g4423 520 SUPERFAMILY HCP-like 61 291 - -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 86 IPR002885 -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 17 51 IPR002885 -
Tpr3g4423 520 PANTHER OSJNBA0060P14.6 PROTEIN 1 499 - -
Tpr3g4423 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 124 158 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 299 333 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 159 192 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 54 87 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 20 53 IPR002885 -
Tpr3g4423 520 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 220 291 IPR011990 GO:0005515
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 152 219 IPR011990 GO:0005515
Tpr3g4423 520 Gene3D Tetratricopeptide repeat domain 81 151 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4423 Tpr-Chr3 49268180 49269742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4423 115 516 Glycosyltransferase AT1G05670 29.612 2.60e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4423 - - lja:Lj1g3v0525420.1 741.495