Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4422 ATGACATTCATGACACATTTGAAATGGTTCAACAATTTGTTTCAAAGAAGTGAGAACAAATTTGTTTATGTCCCAATATCATTGTGTCATAGCAAAGCTCAGTTTCACAATAACAACCTTAAACAACCAAAACCAAACCAAATCCTTAAGAATTACCTTGAATGCAACAATCACACCAAAGTGCTTCTACTCTTTAGAACCTTATTAAGAAAAAAAACATCAACTTTCAACTCCATTGATAGCTTTTCTTTCTTGTATGCTCTTAAAGCCTGCATCAATAAGAAACATTCTTTTATCCATGGAAAACAAATGCATGCCCTTATCATAAAATTTGGATATGAATCCATAATTCAACTCCAAACATCCCTTTTGAAAGTATATGCTGAAGGGGGAAACTTATTTGATGCACACCAAGTGTTTGAGGGAATACCTGAAAAGAATATTATATGTTGGACATCTTTGATTTCTGCTTATGTTGAAAATCATAGACCAAACGAAGGTTTGGAATTGTTTAGATTGATGCTTATGAACAATGTGGAACCTGATCAAGTCGTTGTGACGGTTGCTCTATCGGCTTGTGCTGATACTGGGGGACTTGAAATGGGTGAATGGATTCATGATTTTGTTCGGCGTAAACAAGGGATGAAGATAGATCTGTGTTTCAATAATGCTCTCATAAATATGTATGCTAAATGTGGTGATATTGTAAATGCAAGGAAGTTGTTTGATAGTACAAGAAACAAAGATGTCACAACTTGGACTTCTATGATTGTAGGGCATGCACTACATGGACAAGCACATGAAGCTCTACAACTTTTCTCGCAAATGAACACAGGGAGGGACAAGAAAAATTCGAGTTCCTCTAACTTTATTGTATCACCGAATGATGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCGGGGTTGGTTGAGGAAGGGAAATGCCATTTCAGAAGTATGACAGAAGAGTATGGCATACAACCTAGAGAGCCTCACTTTGGCTGCATGGTGGATCTCTTATGTAGAAACGGGAATCTGAGAGATGCCTATAACTTCATTATGGAGATGACGGTGCCTCCGAATGCAGTAATATGGCGAACCTTGCTGGGGGCGTGCAGCCTCCATGGCGATTTAGAGCTAGGTACAGAAGTTCGACGTAAGCTTCTCAACTTGGACCCTGGCTATGTTGGTGATAGTGTTGCTATGTCGAATATTTATGCAGATAAAGACATGTGGAATAAAAAGTTTATTGTTAGGAATCAAATTACAAAATCAAGACCTCCTGGCTTCAGTTCAGTTGAGGTGGGAAGTGTGGTTAGTCAATTTGTAACTTCAAATAATAATCTTCCTTGA 1359 0.3804 MTFMTHLKWFNNLFQRSENKFVYVPISLCHSKAQFHNNNLKQPKPNQILKNYLECNNHTKVLLLFRTLLRKKTSTFNSIDSFSFLYALKACINKKHSFIHGKQMHALIIKFGYESIIQLQTSLLKVYAEGGNLFDAHQVFEGIPEKNIICWTSLISAYVENHRPNEGLELFRLMLMNNVEPDQVVVTVALSACADTGGLEMGEWIHDFVRRKQGMKIDLCFNNALINMYAKCGDIVNARKLFDSTRNKDVTTWTSMIVGHALHGQAHEALQLFSQMNTGRDKKNSSSSNFIVSPNDVTFIGVLMACSHAGLVEEGKCHFRSMTEEYGIQPREPHFGCMVDLLCRNGNLRDAYNFIMEMTVPPNAVIWRTLLGACSLHGDLELGTEVRRKLLNLDPGYVGDSVAMSNIYADKDMWNKKFIVRNQITKSRPPGFSSVEVGSVVSQFVTSNNNLP* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4422 452 Gene3D Tetratricopeptide repeat domain 288 428 IPR011990 GO:0005515
Tpr3g4422 452 Gene3D Tetratricopeptide repeat domain 44 212 IPR011990 GO:0005515
Tpr3g4422 452 Gene3D Tetratricopeptide repeat domain 213 287 IPR011990 GO:0005515
Tpr3g4422 452 TIGRFAM PPR: pentatricopeptide repeat domain 149 182 IPR002885 -
Tpr3g4422 452 TIGRFAM PPR: pentatricopeptide repeat domain 252 276 IPR002885 -
Tpr3g4422 452 Pfam PPR repeat family 146 194 IPR002885 -
Tpr3g4422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Tpr3g4422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Tpr3g4422 452 Pfam PPR repeat 223 245 IPR002885 -
Tpr3g4422 452 Pfam PPR repeat 252 276 IPR002885 -
Tpr3g4422 452 Pfam PPR repeat 335 358 IPR002885 -
Tpr3g4422 452 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 175 - -
Tpr3g4422 452 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 117 449 - -
Tpr3g4422 452 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 117 449 - -
Tpr3g4422 452 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 40 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4422 Tpr-Chr3 49264345 49266593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4422 48 452 Glycoside Hydrolase AT3G49170 33.902 1.32e-68 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4422 - - lang:109327537 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4422 3 49264345 49266593 Tpr3g4422 3 49264345 49266593 ECH