Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4393 ATGGCGACGAGTATTGGGATAATGGATAGCGCTTATTTTGTCGGTAGGAATGAAATTCTTACTTGGATCAATAATCGTCTTCAACTTAATCTTTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAGATGTTGGACATGACATATCCAGGGGTTGTGCCGATGCACAAGGTGAACTTTGATGCAAAATCAGAATATGAAATTATTCAAAATTATAAAGTTCTGCAGGAAGTGTTCAACAAGCTGAAAATTGACAAGCATATTGAAGTTACCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTACAATGGCTGAAACGTTACTGTGATTCTGTTAATGGTGGCATTATGAATGAAAACTATAATCCTGTGGAGCGTAGGGTTAAGGGTGGAAAGGACCGAAATATTAAGGGTTTTAAGAGCTCAAAATCACTTCATTCAAATGCTATGAATAATTCTAGTTCACTCGATGCACTCAATCTACATAGAGCCTCAGGACCTAAGCACTCAAGGTCAACTGGAGGGTCAGATGAGGCTAATTTGTCAGCAGAGGTTCAGGCCTTGTCCAAGCAGGTTACTGATCTCAAACTCTCGGTGGATCTCTTGGAAAAAGAAAGAGACTTTTACTTTTCAAAACTACGGGATATAGAAATTCTTTGTCAGACATCAGAAGTGGAAAATGAACCTGTTTCGGTAGCAATCAAGAAGATTTTGTATGCTGCTGATGCAAAGGAGTCCGCATTAGAGGAAGCTCAGGCTTACATAGAAGAAGCTGTTGAAGATGAACCAGAAACTGAAACATGA 819 0.4054 MATSIGIMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKSEYEIIQNYKVLQEVFNKLKIDKHIEVTRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKGGKDRNIKGFKSSKSLHSNAMNNSSSLDALNLHRASGPKHSRSTGGSDEANLSAEVQALSKQVTDLKLSVDLLEKERDFYFSKLRDIEILCQTSEVENEPVSVAIKKILYAADAKESALEEAQAYIEEAVEDEPETET* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4393 272 Coils Coil 246 266 - -
Tpr3g4393 272 Gene3D - 6 134 IPR036872 -
Tpr3g4393 272 Coils Coil 190 210 - -
Tpr3g4393 272 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Tpr3g4393 272 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Tpr3g4393 272 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Tpr3g4393 272 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 267 IPR027328 GO:0008017
Tpr3g4393 272 Gene3D - 181 252 - -
Tpr3g4393 272 SUPERFAMILY EB1 dimerisation domain-like 189 248 IPR036133 GO:0008017
Tpr3g4393 272 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Tpr3g4393 272 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 267 - -
Tpr3g4393 272 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4393 Tpr-Chr3 48842005 48847333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4393 K10436 - gmx:100809691 427.943