Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4364 ATGCAGAATATGTTAAGATCAAAGCCAATTAGTAACCTTTCTAGCAGTGCTCGGAGCTTTTTCCTTGGTGGTACGCGATGTAATGCACCAGAAGCCAATTCGTGCACTTGCAATGATGACGAAACATGCGTGTCAGTAAAACAACAGAGGAAGAATGAAGTTTTACTTGCGCAGAAGCCAGCCTCTATAGTATCCAAAACTACATCTCGGGTAGAAGGAACCTATGTTTCAGTAAAACAGGCAAGTGGAACAGGTTCGCACAAGGTTGAGGGTGTTAATCAATCTGGCAGTGTACAACAAGTCAGGTCTACTTTACTTCCATCAAGTAAATCAGACACTGTAACATATTCTCGTGCGGCTGGTGATATTCAGAATCATGTTACACAACCATCGCCTCATGACGGTGAACAGTTTTATAGGTCAGGTATTGCGGCCGTCAATTACATTTCTGATATAGTTAATTCTAAGATTCCTGTATCAGATGGGATGGGTATACTAAACTCCTCTACAAATTCTATGGTTGAACCTCCCTCTGTCATATCCAGCATCAGATCTTCCAATGTGAAACAAATTAGAAAGGAGAGCTTTATTGGTGTTCATCCCAAACCACATGTTTCTACTCAACCGGGGCCATCAAACAATACAAGTAATTATCATGGTTCAAAGTGGAAAGGTGATAAGTCAAAGATAGGTAAAGGCTTTAAGCATGCTGCTTCTTCTGGGATGGAGAGGTCAGAGGTGGCTCCCAATATTCCTTTCAATAATCATGACAGCAGACCCTTACCGCAGAGGACAAGAACTCATTCAAATCGATTTGTCACTAAACTTGATTCCAACATACAAACTTCAAACTCACGAATGTTGGGGTCGTTCAAGGAAAGCTTCAATAAACAACACCCCAGGGATATGAAATCATCAGCAGGAATTGCTTCATCGAAAACACAATATACAAAGACAGGCCGCCGCGGTGTGGAAATCGTTAAAGATATACTGCAACATTTAAAGTGGGGTCCTGCTACAGAGGAGGCTCTTTATAATCTGAATTATTCGATAGATGCATATCAAGGCAACCAAGTCCTAAAGCAACTTAATGACCATTCAGTTGCTCTAAGCTTCTTTTACTGGTTAAAGCGACAACCGGGCTTCCGGCATGATAATCACACTTACACAACCATGGTTGGTATCTTGGGGCGTGCAAGAGAGTTTGGTGCAATGAACAAATTTCTAGAACAGATGGTCAAGGATGGATGCAATCCTAATACTACAACATATAATCGTGTAATTAACAGCTATGGCAAGGCAAACTACCTAAAGGAAGCGATGAATGTCTTCAATCAAATGCAGGAGGAGGGATGTGTGCCTGATCGTGCCACTTACTGCACTCTCATGGATATCCATGCAAAAGCTGGATTTCTTGATGTGGCCATGTCCATGTATGAAAGAATGCAACAAGTTGGCCTTCCTCTCGACACTTTTACTTACAGTGTGATGATCAACTGTTTGGGAAAATCTGGTAATTTAGCTGCTGCTGACAGACTATTTTGTGAAATGGTTGATCAGGGCTGTGTTCCCACTATCGTCACCTACAATATCTTGATTGCTTTGCAAGCTAAAGCAAGGAATTATGAGACAGCATTGAAATTATATCGTGACATGCAGCAGATTGCAGGATTTAAACCCGACAAAGTTACATATAGCATTGTAATGGAGGTGCTTGGTCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTTTTTGTTGAGATGAAGCAGAGGAATTGGGTTCCAGATGAACCTGTTTACGGTCTTCTGGTAGACTTATGGGGAAAGAAAGGTAATGTTGAGAAGGCTTGGGAATGGTACGCAGAAATGCTCGGTGCAGGTTTGCTTCCAAATGTACCAACTTGCAATTCACTCCTCAGTGCATTTCTTAGGGTGCATCGATTGCCAGATGCGTATAATCTTCTCCAAAGCATGGTATCTCTTGGCCTAAGACCTTCTTTGCAGACATATACTTTGCTTCTCAGCTGTTGTACAGATGCACAATCACATTATGATATGGGATTTTGTTGTGAGCTGATGAAAGTCAGCGGCCATCCTGCTCATTCATTTTTACTGTCAATGCCAGCAGCAGGGCCTGATGGTCAAAATGTGAGGGATCATGCAAGCAAATTCTTGGACCTGATGCATTCAGAGGATAGAGAGGGTAAACGAGGGCTTGTAGATGCAGTGGTGGATTTTCTTCACAAATCTGGGCTCAAAGAGGAGGCCGGTTCAGTTTGGGAGGTGGCTGCACAAAGAAATGTATATCCTGATGCTGTGAAAGAGAAAGGCACCTGTTATTGGCTTATAAATCTTCATGTCATGTCTGATGGAACCGCCGTGACCGCATTGTCTAGGACACTTGCTTGGTTTCGCAAACAGATGCTGATATCTGGTGTTAGCCCTACCCGGATAGATATCGTGACTGGATGGGGCCGAAGGAGCAGGGTGACAGGTTCTTCACTTGTTAGACAGTCGGTGCATGAACTGTTGCAAATATTCAGTTTCCCCTTTTTCACTGAAAATGGAAATACAGGTTGTTTTGTGGGTTGTGGAGAGCCTCTTGGTCAGTGGTTGCTCCACCCTTCCGTCGAAAGAATGCATTTAATTTAG 2652 0.4291 MQNMLRSKPISNLSSSARSFFLGGTRCNAPEANSCTCNDDETCVSVKQQRKNEVLLAQKPASIVSKTTSRVEGTYVSVKQASGTGSHKVEGVNQSGSVQQVRSTLLPSSKSDTVTYSRAAGDIQNHVTQPSPHDGEQFYRSGIAAVNYISDIVNSKIPVSDGMGILNSSTNSMVEPPSVISSIRSSNVKQIRKESFIGVHPKPHVSTQPGPSNNTSNYHGSKWKGDKSKIGKGFKHAASSGMERSEVAPNIPFNNHDSRPLPQRTRTHSNRFVTKLDSNIQTSNSRMLGSFKESFNKQHPRDMKSSAGIASSKTQYTKTGRRGVEIVKDILQHLKWGPATEEALYNLNYSIDAYQGNQVLKQLNDHSVALSFFYWLKRQPGFRHDNHTYTTMVGILGRAREFGAMNKFLEQMVKDGCNPNTTTYNRVINSYGKANYLKEAMNVFNQMQEEGCVPDRATYCTLMDIHAKAGFLDVAMSMYERMQQVGLPLDTFTYSVMINCLGKSGNLAAADRLFCEMVDQGCVPTIVTYNILIALQAKARNYETALKLYRDMQQIAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFVEMKQRNWVPDEPVYGLLVDLWGKKGNVEKAWEWYAEMLGAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQSMVSLGLRPSLQTYTLLLSCCTDAQSHYDMGFCCELMKVSGHPAHSFLLSMPAAGPDGQNVRDHASKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGTCYWLINLHVMSDGTAVTALSRTLAWFRKQMLISGVSPTRIDIVTGWGRRSRVTGSSLVRQSVHELLQIFSFPFFTENGNTGCFVGCGEPLGQWLLHPSVERMHLI* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Tpr3g4364 883 PANTHER BNAA07G31720D PROTEIN 4 882 - -
Tpr3g4364 883 SUPERFAMILY HCP-like 418 624 - -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 560 IPR002885 -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Tpr3g4364 883 SUPERFAMILY SMR domain-like 781 861 IPR036063 -
Tpr3g4364 883 SMART SMR_2 780 872 IPR002625 -
Tpr3g4364 883 Gene3D Tetratricopeptide repeat domain 470 622 IPR011990 GO:0005515
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Tpr3g4364 883 PANTHER OS03G0856100 PROTEIN 4 882 - -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Tpr3g4364 883 ProSiteProfiles Smr domain profile. 783 864 IPR002625 -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Tpr3g4364 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Tpr3g4364 883 MobiDBLite consensus disorder prediction 198 245 - -
Tpr3g4364 883 MobiDBLite consensus disorder prediction 206 221 - -
Tpr3g4364 883 Pfam PPR repeat family 419 465 IPR002885 -
Tpr3g4364 883 Pfam PPR repeat family 630 677 IPR002885 -
Tpr3g4364 883 Pfam PPR repeat family 524 571 IPR002885 -
Tpr3g4364 883 Pfam PPR repeat 599 627 IPR002885 -
Tpr3g4364 883 Pfam PPR repeat 492 522 IPR002885 -
Tpr3g4364 883 Pfam PPR repeat 388 417 IPR002885 -
Tpr3g4364 883 Gene3D Tetratricopeptide repeat domain 348 469 IPR011990 GO:0005515
Tpr3g4364 883 Gene3D Tetratricopeptide repeat domain 623 688 IPR011990 GO:0005515
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 599 632 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 634 666 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 423 455 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Tpr3g4364 883 TIGRFAM PPR: pentatricopeptide repeat domain 563 597 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4364 Tpr-Chr3 48628735 48632808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4364 379 749 Glycosyltransferase AT1G05670 26.685 5.28e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4364 - - gmx:100819996 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4364 3 48628735 48632808 Tpr3g4364 3 48628735 48632808 ECH