LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g3420	ATGTTGAATGGAAGAAGAAACATGACATTGACATGCATATACCAATTTACCCATTTACATTCACTCACTCATCATAATCATAATCATAACCATATTCCCCTTATTAATTCCACCTTCTCTACTCACCCCAACCACAAACCTCTCTTCCAATTCTTCTCCGGTATTCTGAGGCCTACAATTCGATCATTTTCAACCAAAATAACCGCTTCCTGCAAAACCATGGCCAGTTTCGATTCCGACTCCGTCACTTACCTCAAACAGCAAGAAGCCGCTGAGATTGATGAAACTCTCATGGGTCCTCTTGGCTTTAGCGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTACTTCCATATATGAGGTTTATAAACCCGGTGACTATAGTCGTGTTCTTATTGTATGTGGTCCTGGTAACAATGGTGGCGATGGTCTGGTGGCTGCCCGACACCTGCATCACTTTGGTTACAAGCCATTGGTCTGCTACCCAAAACGTACCCCCAAGCCTCTCTATGCTGGGTTAGTTACTCAGCTTGAAGCGTTGTCAATCCCTTTCTTGTCGGTGGAAGATCTACCTCCAGATTTCACCAACGACTTTGACATTCTAGTCGATGCCATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCCTTTGATGATTTGATCCAAAGACTTGTTTCTTTACGTAATAATCATAATCAAATTGGCCAAAAAAGACCGGTTATAGTCTCTGTAGATATTCCCTCTGGATGGCATGTTGAAGAGGGAGATGTTGATGGCACAGGAATTAAACCTGATATGTTGATCTCTTTGACAGCACCAAAATTTTGTGCAAAGAAGTTTGGCGGCCCTCACCACTTTTTAGGAGGTAGATTTGTCCCACCTGCTATTGCTGAAAAGTATAAGCTTATACTTCCACCCTATCCTGGAACATCCATGTGTGTCCGAATTGGAAAGCCTCCTCAAATTGATATTTCAGCTCTACGTGAGAACTATATCTCTCCAGAATTTCTTGAACACCAGGTGGAGGCAGACCCCCTTAATCAGTTTCGTAAATGGTTTGATGATGCTTTGGCTGCGGGTTTGAAGGAACCAAATGCTATGGGCTTATCAACTGTAGGGAAGGATGGAAAACCCTCATCACGGATTGTATTGCTAAAAGGCTTCGACAAGGATGGATTTGTGTGGTTCACAAACTACGAAAGTCAAAAGGGACGTGCATTATCTGAAAATCCACATGCATCACTTCTTTTTTATTGGGATGGTTTAAACCGGCAGGTACGTGTGGAGGGGTATGTTCAGAAAGTTTCTGATGAGGAATCAGAGCAGTATTTCCATAGCCGTCCAAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTACTGTAGTGCCTGGTAGGAATGTTCTTTACGACGAGTACAAAGAGCTGGAACAAAAATATGCTGATGGAAGTGTGATCCCTAAACCTAAAATTTGGGGAGGATACAGGCTTACACCACATCTTTATGAATTTTGGCAAGGACAGAAATCTCGCTTGCATGACAGGTTGCGATATGTTCCCCATGATATCGATGGACAAAGGCTATGGAAGGTTGAGCGGTTGGCTCCCTGA	1623	0.4362	MLNGRRNMTLTCIYQFTHLHSLTHHNHNHNHIPLINSTFSTHPNHKPLFQFFSGILRPTIRSFSTKITASCKTMASFDSDSVTYLKQQEAAEIDETLMGPLGFSVDQLMELAGLSVATSIYEVYKPGDYSRVLIVCGPGNNGGDGLVAARHLHHFGYKPLVCYPKRTPKPLYAGLVTQLEALSIPFLSVEDLPPDFTNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLRNNHNQIGQKRPVIVSVDIPSGWHVEEGDVDGTGIKPDMLISLTAPKFCAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEHQVEADPLNQFRKWFDDALAAGLKEPNAMGLSTVGKDGKPSSRIVLLKGFDKDGFVWFTNYESQKGRALSENPHASLLFYWDGLNRQVRVEGYVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRNVLYDEYKELEQKYADGSVIPKPKIWGGYRLTPHLYEFWQGQKSRLHDRLRYVPHDIDGQRLWKVERLAP*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g3420	540	Pfam	YjeF-related protein N-terminus	106	279	IPR004443	-
	Tpr3g3420	540	ProSitePatterns	Pyridoxamine 5'-phosphate oxidase signature.	506	519	IPR019740	GO:0016638
	Tpr3g3420	540	SUPERFAMILY	YjeF N-terminal domain-like	84	314	IPR036652	-
	Tpr3g3420	540	TIGRFAM	yjeF_nterm: YjeF family N-terminal domain	87	282	IPR004443	-
	Tpr3g3420	540	Pfam	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region	496	540	IPR019576	-
	Tpr3g3420	540	TIGRFAM	pdxH: pyridoxamine 5'-phosphate oxidase	323	540	IPR000659	GO:0004733\|GO:0008615\|GO:0010181
	Tpr3g3420	540	PANTHER	NAD(P)H-HYDRATE EPIMERASE	79	525	IPR032976	-
	Tpr3g3420	540	Hamap	NAD(P)H-hydrate epimerase [nnrE].	86	322	IPR004443	-
	Tpr3g3420	540	Hamap	Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH].	333	540	IPR000659	GO:0004733\|GO:0008615\|GO:0010181
	Tpr3g3420	540	SUPERFAMILY	FMN-binding split barrel	341	540	-	-
	Tpr3g3420	540	Gene3D	-	334	531	IPR012349	-
	Tpr3g3420	540	Pfam	Pyridoxamine 5'-phosphate oxidase	356	442	IPR011576	-
	Tpr3g3420	540	Gene3D	-	81	324	IPR036652	-
	Tpr3g3420	540	ProSiteProfiles	YjeF N-terminal domain profile.	90	307	IPR004443	-
	Tpr3g3420	540	PANTHER	NAD(P)H-HYDRATE EPIMERASE	79	525	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g3420	Tpr-Chr3	37713634	37720366	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g3420	K23998		-	gmx:100795497	902.508

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g3420	3	37713634	37720366	Tpr3g3420	3	37713634	37720366	ECH