Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3409 ATGAAATTCTCAGTAATCCAGTGCTGCAGACACAGGCAACATAACTGTGTAACTTCGTCTTCTTCATTACCATGGATATCACCTCTCAATTTTACAAAACCTGTAAAACCTAAACTAGATCCACCACCCGAAATCACTCTCACTGAAACAAGGAAAAAGAGCAAATATATCACTCATGATGTTGCTATCAATTTAATCAAACGAGAGAAAGATCCACAACATGCTTTGAAAATATTTAACATGATATCTGAACAAAAAGGTTTTAATCACAACAATGCTACGTATGCGTCGATTTTACAAAAGCTTGCTCAGTTTAAGAAGTTTCAAGCCGTTGAAAGAGTTTTACATCAAATGACTTATGAAACTTGTAAATTTCATGAGGGTGTATTTATTAATCTGATGAAGCATTACTCGAAATGTTGTTTTCATGAAAAAGTGTTGGATACTTTTTTCGTTATTCAAACAATTGTTCGTGAAAAGCCTTCTCCGAAAGCTATTAGCTCGTGTCTCAATCTTTTGGTTGATTCGAATCGGGTTGATTTGGCGCGGAAATTGCTCTTGCATGCCAAGAGGAGTTTAACTTATAAGCCAAATGTATGTATTTTCAATATTTTGGTGAAGTACCATTGTAAAAACGGGGATCTTGACTCTGCTTTTGAAGTTGTTAAAGAAATGAGAAACTCTAAGTATTCGTATCCTAATGTAATTACTTACTCGACCTTGATGGATGGTCTCTGTCGAAATGGGAAACTCAAAGAAGCTTTTGAACTTTTTGAGGAAATGATTTCGAAGGATCGGATTGTGCCTGATCCCCTTACTTACAATGTTTTGATCAATGGATTTTGCCGCGGAGGGAAAGCTGATCGCGCTAGGAATGTAATTGAATTTATGAAAAATAATGGTTGTTGTCCTAATGTATTCAATTACTCTGCCCTAGTGGATGGATTATGTAAAGCGGGGAAACCGCAAGATGCAAAAGAGGTTTTGGCTGAGATGAAGAGTTCTGGGTTGAAACCTGATACAGTTACCTACACTTCTTTGATAAATTTCTTGTGTAGGAATGGACAAGTCGATGAGGCTATTGAGTTGCTTAAAGAAATGAAGGAAAATGAATGTGAGGCTGATACTGTTACATTCAATGTGATACTTGGAGGCTTGTGCAGAGAAGGTAGATTTGATGAGGCTTTGGATATGGTTGAGAAACTTCCGCACCAGGGTATCTATTTGAACAAAGGTAGTTATAGGATTGTCCTAAATTCCTTAACGCAAAAATGTGAGTTGAGGAAGGCGAAGAAATTATTAGGACTAATGCTAAGTAGGGGGTTTGTACCTCATTATGCTACCTCAAATGAATTATTGGTTTGTCTTTGTAAAGAAGGGATGGCTGACGATGCTGCTGCGGCTCTATTTGACTTGGTGGGTATGGGGTTCCAGCCACAATTTGATACTTGGGAACTTTTAATTGAATTAATCTGTAGAGACAGAAAGTTATTGTATGTTTTTGAGCTACTTGATGAATTAGTGACAGCAAATTCTTGA 1539 0.3704 MKFSVIQCCRHRQHNCVTSSSSLPWISPLNFTKPVKPKLDPPPEITLTETRKKSKYITHDVAINLIKREKDPQHALKIFNMISEQKGFNHNNATYASILQKLAQFKKFQAVERVLHQMTYETCKFHEGVFINLMKHYSKCCFHEKVLDTFFVIQTIVREKPSPKAISSCLNLLVDSNRVDLARKLLLHAKRSLTYKPNVCIFNILVKYHCKNGDLDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGKLKEAFELFEEMISKDRIVPDPLTYNVLINGFCRGGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKPQDAKEVLAEMKSSGLKPDTVTYTSLINFLCRNGQVDEAIELLKEMKENECEADTVTFNVILGGLCREGRFDEALDMVEKLPHQGIYLNKGSYRIVLNSLTQKCELRKAKKLLGLMLSRGFVPHYATSNELLVCLCKEGMADDAAAALFDLVGMGFQPQFDTWELLIELICRDRKLLYVFELLDELVTANS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Tpr3g3409 512 TIGRFAM PPR: pentatricopeptide repeat domain 413 444 IPR002885 -
Tpr3g3409 512 Pfam PPR repeat family 339 388 IPR002885 -
Tpr3g3409 512 Pfam PPR repeat family 233 283 IPR002885 -
Tpr3g3409 512 Gene3D Tetratricopeptide repeat domain 44 231 IPR011990 GO:0005515
Tpr3g3409 512 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 15 510 - -
Tpr3g3409 512 Pfam PPR repeat 413 442 IPR002885 -
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Tpr3g3409 512 SUPERFAMILY HCP-like 209 406 - -
Tpr3g3409 512 Pfam PPR repeat 195 226 IPR002885 -
Tpr3g3409 512 Pfam PPR repeat 300 333 IPR002885 -
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tpr3g3409 512 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 15 510 - -
Tpr3g3409 512 Gene3D Tetratricopeptide repeat domain 232 335 IPR011990 GO:0005515
Tpr3g3409 512 Gene3D Tetratricopeptide repeat domain 426 512 IPR011990 GO:0005515
Tpr3g3409 512 Gene3D Tetratricopeptide repeat domain 336 425 IPR011990 GO:0005515
Tpr3g3409 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3409 234 511 Glycosyltransferase AT1G05670 29.137 3.91e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3409 - - mtr:MTR_3g100600 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3409 3 37601855 37604166 Tpr3g3409 3 37601855 37604166 ECH