Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3404 ATGCATGTCACAGGGGATCTAGGGTTTTTTAATCTGGTCCTTGTTGTGGTGGTTTGTGTGGTTTTTCCGGTGATCGGATTTATAATTCGCCGGAAATGGCAGCTTGCGGTTGCTAGAAATGAAGAGATCAAGAGGCTTTTGATTTTGGCTGCTGAGGAAACTGCTAGGGTTGAGAGAGAAGCTTCTTATGTGTCCTCCGCCGCGGTGGTTTCCGCCACCACTAGCAATTATCAATGTGCTCTCTGCTATTTCCCCGCCACTGCGCGCTGTGCTCAGTGCAAATCCGTTCGCTACTGTTCCGCTCATTGCCAAACCGTTCACTGGCGTCAAGGTCATAAATTTGAATGTCGTCCTCCCAGCAAAACACATCAGAGCGATGACATAATAAGTGATATTGACAAGACGGAAGCGGAGCAAGATTACTCTGGTATCCATGAGGAGAAATCTGAAAGTAGAGATACAGAGTATAAAATATCCTCTGAAGATACCCACTTTTCTCCTGACGTTTCATTTAGAAAGGATGATAATATTAGAGCTCGGTTTCTTGCAGAGGAAAATTTAGCGGATTCTAATTCTGAATTTTCCAGTAACTCATTTTCTGGATTTTCGGCTTCCACAAGTTCTAATGATTCATCTGATGATTCTTCTGTGTGTGAGAGTATCATCTCAAATGAGCAAGACAGATCAGAGGGACATATTTCTGTTTCCACCCTTGACAAGGTGGATGCAGCAATGTCTTCTTCACCAAAATTTGCAAGTTTGCTTGATTCAGGCGATGGTTCTTCTACTGTTCATAAATTAAATCATATCGCACCTGGTTCTAGAAAAGAAGAGAGGAAACTTGCATCAAATGATGCTTCAGGCTCGAGCATGTGGAAGGGGGTGAAAACTGAGCCTTCTGGATTCTGGGATGAAGCTCTTGATTTGAGAGAGGTAAATGTTGACGTTAATAATGACATTTATCAAATTCATTCTGATGAACCCACCTGTGAAAAGAATGATTCTGGATTGTCATTTCGCTTCCAATTCAGTACCATGTCTCCGTTGCATGTACAAGATACTGAGGCTAAAGTATCTTTGCCTGATGACGCTCTTCCAAACTCTATTGGGAAGAATATGCCACATCCAGGATCAGCATCATCTGAGAATGACAGTATGAATTCCTTAAAGGCGAGGAGGAACCACTCAATGATCAACAACAAAGATTTCAATATTATTAGCAATAGTGGTTCTGAATCTGAAAAATTGGAATCTAAAGACAGGTCTGAGCTACCTCTATACTCCTCTTCCTCCCAATCCTCCAGTATTGGCAAAGATTTAGGTTCTGTGGCATCAAATCATGTTGTGGACAACCATGGCTGCACTTTGAAGTCCACCGATATTAGAGGCCAGACTCATGAGGTTGTTGGTTCTAAATTAGCTTCTACAACTGAAGGACATTCACATCCCAGTACAAAAGATAGGAATATTAAATATGGGACTGTCACTTCTCATGTTGCCAACTATTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTAAAAGTCGTTGATCAGTTTAGAGGATCGAGTTTGTCAAAGCACATTCCTTTAGCAGTTGGGAGTGATATTGCTGGAAAATACAACGACAAGGTTCTTTTTCCATATGAATCATTTGTGAAACTTTATAACTTCAACAAGGTGGAGTTGCGCCCATTCGGTCTTATAAATTGTGGAAACAGTTGCTATGCTAATGCTGTACTTCAGTGCCTAGCTTTTACACCATCCTTAACTGCTTATCTGCTTCAAGGACTACATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATTTTGAAGTCAAAGGACACTAAATCTGCACTATCTCCAATGAGTATACTCTCTCAACTACAGAGTATTGGGAGTCAGCTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTCTAAGACATGCTATTGACACCATGCAATCGGTTTGCCTTATGGAAGCTGGGGTTAAGGCATCGGGTTCATTGGAGGACACTACTTTAATGGGTCAAACATTTGGAGGATACCTTCGATCAAAGATAAAATGCATGAAATGTGGTGGGAAGTCCGAGCGTCATGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCAGAGGCCCTTCGACGGTTTACAAGCACCGAGTCTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAATTTCAGAGGCACCCAATATTCTTACAGTTGCATTGAAGAGATTTCAGTCTGGAAAATTCGGAAAGCTTAACAAGCCTATTCAATTTCCGGAAATACTTGACCTGGCGCCTTTCATGAGTGGGACCAGTGATAAGACACCCATTTACAGATTGTATGGTGTGGTTGTTCATTTGGATATTATGAATGCTGCTTTTTCCGGTCACTATGTGTGCTACGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGACGACAGTGTGGTAACAGCTGTTGATTTAGAGAGAGTCATGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCTCCAAGGGCCCCAAAATTAATTAGGAACAGGATTCTATCCTCGGATTCAAAAAGTAAGGTCAATGGAAAGTCTGTGAAAGCAGGGTCTATTTCTGGTGCAGCTGAACCCATCACTAGTTCCATTTCTCCCGACGGCTCACCCACCTTGGAGTCTTTCTATTCAAGGTTTCACCACCTGAAAAAGGTTTTAGAAGAAGACTCAAGTGATAATTCATCACTTTTCAGCAGTAATTCCGATGAAGGTTCTTGCAGTACTGACAGTACCCGTGATTCAACTAGCATGGATGACTTCTCTGATTATATTTTTGGTGATTCAGGGCATGGGTGGAGTAGCACGTGGAGGAATTCTGATTCTGATACGTCTTCGTCCTCCTCATCTCCCTTGAATTATAGACATTCGCCCTTATCTGATATGGACAAGTATGATTCAATGTCTCCAGATGCAACTAGTTCGGAGACAGATAGGGGTGCTAGTATTTCTCATTTACATTCTGACACAATTTTAAAGCATAGAAAATTAGATAGTAGTAACATTAGCAGCAATAGTAGTAGTAGTGAAGCCGACTCTTTTCTAAAACTAGGATCTAACCATTCTAATGATAAGAATTCTGGTGTATCGTGTAGAAAGTCGAGGAAAAGAACAGGTTGA 3264 0.4102 MHVTGDLGFFNLVLVVVVCVVFPVIGFIIRRKWQLAVARNEEIKRLLILAAEETARVEREASYVSSAAVVSATTSNYQCALCYFPATARCAQCKSVRYCSAHCQTVHWRQGHKFECRPPSKTHQSDDIISDIDKTEAEQDYSGIHEEKSESRDTEYKISSEDTHFSPDVSFRKDDNIRARFLAEENLADSNSEFSSNSFSGFSASTSSNDSSDDSSVCESIISNEQDRSEGHISVSTLDKVDAAMSSSPKFASLLDSGDGSSTVHKLNHIAPGSRKEERKLASNDASGSSMWKGVKTEPSGFWDEALDLREVNVDVNNDIYQIHSDEPTCEKNDSGLSFRFQFSTMSPLHVQDTEAKVSLPDDALPNSIGKNMPHPGSASSENDSMNSLKARRNHSMINNKDFNIISNSGSESEKLESKDRSELPLYSSSSQSSSIGKDLGSVASNHVVDNHGCTLKSTDIRGQTHEVVGSKLASTTEGHSHPSTKDRNIKYGTVTSHVANYSANSKSGLKTSVLKVVDQFRGSSLSKHIPLAVGSDIAGKYNDKVLFPYESFVKLYNFNKVELRPFGLINCGNSCYANAVLQCLAFTPSLTAYLLQGLHSKSCANKKWCFTCEFERLILKSKDTKSALSPMSILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGVKASGSLEDTTLMGQTFGGYLRSKIKCMKCGGKSERHERMMDLTVEIEGEISTLAEALRRFTSTESLDGENKYHCVRCKSYEKAKKKLTISEAPNILTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKTPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVDLERVMTKGAYMLFYARCSPRAPKLIRNRILSSDSKSKVNGKSVKAGSISGAAEPITSSISPDGSPTLESFYSRFHHLKKVLEEDSSDNSSLFSSNSDEGSCSTDSTRDSTSMDDFSDYIFGDSGHGWSSTWRNSDSDTSSSSSSPLNYRHSPLSDMDKYDSMSPDATSSETDRGASISHLHSDTILKHRKLDSSNISSNSSSSEADSFLKLGSNHSNDKNSGVSCRKSRKRTG* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 125 161 - -
Tpr3g3404 1087 ProSiteProfiles Zinc finger MYND-type profile. 79 116 IPR002893 -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 941 962 - -
Tpr3g3404 1087 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 567 871 IPR028889 -
Tpr3g3404 1087 ProSitePatterns Zinc finger MYND-type signature. 79 116 IPR002893 -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 271 293 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 990 1004 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 1045 1075 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 1015 1029 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 423 438 - -
Tpr3g3404 1087 Gene3D - 61 122 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 990 1087 - -
Tpr3g3404 1087 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 1065 - -
Tpr3g3404 1087 SUPERFAMILY HIT/MYND zinc finger-like 73 119 - -
Tpr3g3404 1087 MobiDBLite consensus disorder prediction 400 438 - -
Tpr3g3404 1087 Pfam MYND finger 79 116 IPR002893 -
Tpr3g3404 1087 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 568 583 IPR018200 GO:0004843|GO:0006511
Tpr3g3404 1087 Pfam Ubiquitin carboxyl-terminal hydrolase 567 868 IPR001394 GO:0004843|GO:0016579
Tpr3g3404 1087 Gene3D Cysteine proteinases 560 882 - -
Tpr3g3404 1087 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 20 1065 - -
Tpr3g3404 1087 SUPERFAMILY Cysteine proteinases 563 873 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3404 Tpr-Chr3 37562981 37570723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3404 545 875 Miscellaneous Gene Families AT4G31670 50.450 2.07e-119 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3404 K11855 - gmx:100795674 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3404 3 37562981 37570723 Tpr3g3404 3 37562981 37570723 ECH