Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3378 ATGTCTACCACTAATGAAGATTTTCAAGGTGTTTCAAATTGTTATGTGTTCAAGAGCCGATTGCAAGAGTATGCTCAGAAAGCGGGACTCCCCACACCGGTGTATGAAACTATCAAGGAAGGTCCTTCCCATGAACCTTCTTTTAGGTCAACAGTGGTTGTGAATGACGTTCGGTATGATTCTTTGGTTGGGTTTTTTAACCGTAAAGCTGCAGAACAGTCAGCTGCAGAGGTTGCTTTGGTGGAGTTGGCCAAATCTGGTGCAGTCGATCAGTCCATCACTCAACCTGTTCATGAAACTGGATTATGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAATTATGCAATGCCAACGTATCAGTGCAAAAAGGATGACACACCACGTAGAGCACCATTATTTTCATGTACAGTCGACATTGGAGGGATTCTCTATATTGGGGGACAAACAAAAACTAAGAAGGAAGCGGAGATAAAAGCCGCAAGAACTGCTTTATTAGCTATCCAGACAAATGCATCTCAGTCTTCTCAAAACCAGTTTGGCCCTTTGACTGTCATTCCATCCAGAAAAAGGCCAGCAGATCCTGTTGCTGATGAGGCTTTGAAAGCTCCAAAGCCTAAGAAATCACGCTTTAAAAGGAAATGTTCCAAGAGGAAACCGTCTAAAAATAAGAGGCGCCGTAACAATGCTGGCGATGGAGCAAATATCAATCCCGAGGTAGAATCAGTTAATGGTGAATCTGGCCTCCAGGAAATCAAATCTGAAAACGCATTCCCTTCGGAAGCCATGAAGAATTCTGAGAATGGTGTATCATCCACAACTATCAATCCCAAGGTAGAATCAATTAATGGTGAATCTGGCCTCCAGGAAACCAAATCTGAAGCAGCATTCCCTTTAGAAGCCATGAAGATTTCTGAGAATGGAGTATCAACTGCAAATATCAATCACGGGGTAGAATCACTAGCAAGTGTTAATGGTGAATCTGGCCTCCTGGAAATCAAATCTGAAGCAGAATTTCCTTCAGAAGCCTTGAAGATTTCTGAGAATGGAGTATCAACTACAAATATCAATCTCGGGGTAGAATCACTTGCAAGTGTTAATGGCGAATCTGGCCTCCATGAAATCAAAACTGAAGCAGCATTACCTTCAGAAATCATGAAGAATCCTGAGAATGGTGTATCACCTACAAATATCAATCTTGGGGTTGAATCACTTGCAAGTGTTAATGGTGAATCTGGCCTCCAGAAAATCAAATCTGAAGCAGCAACGCCTTCGGAAGCCATGGAGATTTCTGAGAACGGAGTATCAACTACAAATATCAATCCAAAGGTAGAATCACTAGCAAGTGTTAATGGTGAATCCGGTCTCCAGGAAATCAAATCTGAAGCAGCATTGCCTTCGGAAGCCATGGAGATTTCTGAGAATAGAGCATTAACTACAAATATCAATCCAAAGGTAGAATCACTAGCAAGTGTTAATGGTGAATCCGGCCTCCAGGAAATCAAATCTGAAGCAGCATTGCCTTCGGAAGCTATGGAGATTTCTGAGAATGGAGTATCGACTACAAATATCAATCCCGAGGTAGAATCACTAGCAAGTGTTAATGGTGAATCCGGTCTCCAGGAAATCAAATCTGAAGCAGCATTGCCTTCGGAAGCGATGGAGATTTCTGAGAATGGAGCATTAACTACAAATATCAATCCCGGGGTAGAATTACTAGCAAGTGTTAATGGTGAATCTCGCCTCCAAGAAATCAAATCTGAAGCAGCATTGCCTTCGGAATCCATCATGAATTCTGAGAACGGAGAATCAACTAATCATCATGAGAAAGAGACATTAGCTGGAGACGGTTCTTTTGCTTTAAATAATCAAAAGGTTTTTGAAAATGAGAAGTCAGCAGAATTGCAATCCAAAGAGGACAGTCCTGGAAATGTTGTTACAGAAGTGGTGTTCGCGCCTAATGGAGACATGCCGACAATGAGTGCGGAGATGAACGAACAGCGTCGTAATGGAGATATGGTCTTTGGAGAATGA 2037 0.4202 MSTTNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVVVNDVRYDSLVGFFNRKAAEQSAAEVALVELAKSGAVDQSITQPVHETGLCKNLLQEYAQKMNYAMPTYQCKKDDTPRRAPLFSCTVDIGGILYIGGQTKTKKEAEIKAARTALLAIQTNASQSSQNQFGPLTVIPSRKRPADPVADEALKAPKPKKSRFKRKCSKRKPSKNKRRRNNAGDGANINPEVESVNGESGLQEIKSENAFPSEAMKNSENGVSSTTINPKVESINGESGLQETKSEAAFPLEAMKISENGVSTANINHGVESLASVNGESGLLEIKSEAEFPSEALKISENGVSTTNINLGVESLASVNGESGLHEIKTEAALPSEIMKNPENGVSPTNINLGVESLASVNGESGLQKIKSEAATPSEAMEISENGVSTTNINPKVESLASVNGESGLQEIKSEAALPSEAMEISENRALTTNINPKVESLASVNGESGLQEIKSEAALPSEAMEISENGVSTTNINPEVESLASVNGESGLQEIKSEAALPSEAMEISENGALTTNINPGVELLASVNGESRLQEIKSEAALPSESIMNSENGESTNHHEKETLAGDGSFALNNQKVFENEKSAELQSKEDSPGNVVTEVVFAPNGDMPTMSAEMNEQRRNGDMVFGE* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3378 678 CDD DSRM_AtDRB-like_rpt1 16 84 IPR044450 GO:0003725
Tpr3g3378 678 PANTHER RIBONUCLEASE III 1 295 IPR011907 GO:0003723|GO:0004525|GO:0006364
Tpr3g3378 678 Pfam Double-stranded RNA binding motif 18 80 IPR014720 -
Tpr3g3378 678 Pfam Double-stranded RNA binding motif 104 167 IPR014720 -
Tpr3g3378 678 SUPERFAMILY dsRNA-binding domain-like 16 83 - -
Tpr3g3378 678 MobiDBLite consensus disorder prediction 587 620 - -
Tpr3g3378 678 Gene3D - 99 171 - -
Tpr3g3378 678 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 102 171 IPR014720 -
Tpr3g3378 678 SMART DRBM_3 17 84 IPR014720 -
Tpr3g3378 678 SMART DRBM_3 103 170 IPR014720 -
Tpr3g3378 678 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 295 IPR031147 GO:0003725
Tpr3g3378 678 MobiDBLite consensus disorder prediction 207 226 - -
Tpr3g3378 678 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 16 85 IPR014720 -
Tpr3g3378 678 Gene3D - 17 98 - -
Tpr3g3378 678 MobiDBLite consensus disorder prediction 173 277 - -
Tpr3g3378 678 MobiDBLite consensus disorder prediction 653 678 - -
Tpr3g3378 678 MobiDBLite consensus disorder prediction 241 277 - -
Tpr3g3378 678 SUPERFAMILY dsRNA-binding domain-like 104 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3378 Tpr-Chr3 37284935 37289036 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3378 - - mtr:MTR_3g100120 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3378 3 37284935 37289036 Tpr3g3378 3 37284935 37289036 ECH