Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3318 ATGGAGGAACCACCGTGTTCGTCATCGGCGAGATCGAGCACCAAAGGAAAACTCTCAATCGGTCCGATCATCGGTATCAACTTACTGAACGATGATATTCTCCAAAACATTCTCACCAGACTTCCTGCACTATCGTTTGCTTCTGCATCTTGCGTTAACAAATCATGGAATTCCGTTTGCAATCACATCATTTCTCGTCCTAAGCTCTCTTCTGCACTTTCTCTCAACCCTTCGCTCCGCGACGCTGTGAATGAGGTTGTTAACAAGGTTCTATCTGAGCCAATTCGACCTCATTTTGCTATTGTCAGTATTGGAAGAGGATTCGATTCGAACAAGATTCTCCGTCTTATTAGACGGAGATTGGGGTTCAAAATTCCGGTTGTTGTCACGATGAATAATGGGGTTATTGGAAGGGATGCTCTTACTAATGAATTTAAAGAGGTAAAATGGGGTGCTCTTTTTAGTGGCATTGGTGACGAAGAATATGCAACAAATATAAATGAAGGGATAGTTTTGACAGTTGGCTACTTGCCAGGATTAAAAGTTGAAGCTCTACCGTTACTGCGACTGCCAAAGACACCTCAAGAACCATGCGTTGATCATTTTGTAATGGCTATCAAGGAATACTCGGCCTCTGTCTCTGGTCGCCAATTCCCTGTTGGGGTTATATTATTTGGAGACGCAAGCAGTGACATGAAACTGGTTGTGGAGAAGTTGGATTATGCCATGCCTAGAGACACATTCATTGTGGGTGATGAGAGAGGCTGTTCTTTATTCGGATATGGAAATGATTCTAGAAATGTCTGTGGTAGTAGAGGGTACATAGAAGCTGTTGCTCTTGTATTTGCTCAGGACCGAAACAGGTCTTCTGGAAATATTAGATTTCATGTTGCATTCTCAAATGGTGTTTCACCTGTGGGTGGCAGATACAAGGCAGCTTCAGTTAGAACAAACAGCACCGATTGTTCAACATGGCTAACTGCCAAAAGGGAAGGGCATCAAGAACTTCTTGATGGTCAGACTATTCTGCATGATATTACCACTTTGCTGGAAAATCATATTGAGCCTCCTGAGTTGTACGTCGGAGTAACTAAACACAGGAAAGTTTCCATTGGAGCAGAGAGGCCAATGCCAAAAACTTGTATTGCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGATGGAATGGGCATCAAAACAGGAGATATCTTTCAGTTCTACTATTCAGATCCTAATGTTGCATTAGCTTCATTAACTGACGTTCGTGATGCCCTTAACAAAGTTAAGCTGGAGAGGAATTCTAGGAGTTTTGAAGGTGATGGAGACAATGCTACCAATGTTTTCGGTGGTATTATTTTTGCTTGCTATGGCCGTGGCGAATCATTTTTTGGACGTCCTAATGCTGATAGCTCCCCCTTCTTGGAGACTTTTCCAGGAGTGCCATTGGGTGGAGTATTTTGTGGTGGTGAAATGGTGCGTCCTTCTACCAATTTGATTGGTCTATGTTCAGATGCAAAGCCCATCAGTTGCTTTTTGCATGTTTATAGCACTGTCTATTTAGTGATGTCATATGATCCTCCCTCTGTGGAATATTAG 1608 0.4254 MEEPPCSSSARSSTKGKLSIGPIIGINLLNDDILQNILTRLPALSFASASCVNKSWNSVCNHIISRPKLSSALSLNPSLRDAVNEVVNKVLSEPIRPHFAIVSIGRGFDSNKILRLIRRRLGFKIPVVVTMNNGVIGRDALTNEFKEVKWGALFSGIGDEEYATNINEGIVLTVGYLPGLKVEALPLLRLPKTPQEPCVDHFVMAIKEYSASVSGRQFPVGVILFGDASSDMKLVVEKLDYAMPRDTFIVGDERGCSLFGYGNDSRNVCGSRGYIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGRYKAASVRTNSTDCSTWLTAKREGHQELLDGQTILHDITTLLENHIEPPELYVGVTKHRKVSIGAERPMPKTCIAYHGVVGGDEEYLYVDGMGIKTGDIFQFYYSDPNVALASLTDVRDALNKVKLERNSRSFEGDGDNATNVFGGIIFACYGRGESFFGRPNADSSPFLETFPGVPLGGVFCGGEMVRPSTNLIGLCSDAKPISCFLHVYSTVYLVMSYDPPSVEY* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3318 535 Pfam FIST N domain 99 316 IPR013702 -
Tpr3g3318 535 SMART fbox_2 29 69 IPR001810 GO:0005515
Tpr3g3318 535 SUPERFAMILY F-box domain 26 62 IPR036047 GO:0005515
Tpr3g3318 535 PANTHER F-BOX ONLY PROTEIN 22 25 534 - -
Tpr3g3318 535 Pfam F-box domain 29 64 IPR001810 GO:0005515
Tpr3g3318 535 Pfam FIST C domain 401 496 IPR019494 -
Tpr3g3318 535 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 25 534 - -
Tpr3g3318 535 SMART FIST_C_2 342 498 IPR019494 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3318 - - gmx:100815778 779.63