Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3312 ATGGAAGTTTCAAAAGAACCCAATTCAAACCCGGGTCGGATCGACGATTCAGAACTCGAACTCTACACCATTCCAAGCTCTTCCAAATGGTTCGCATGGGACGAAATCCACGAAACAGAGAAAACATCATTCAAAGAATACTTCGATGGAACTTCAATTTCGAGAACTCCAAAGATATACAAAGAATACAGAGACTTCATCATCAACAAGTATCGTGAAGAACCTTCTAGAAGACTCACGTTCACCGAGGTACGAAAATCACTAGTTGGTGACGTCTCGTTTTTGTATAAGGTTTTCCTTTTTTTGGAGCATTGGGGTTTGATTAACTACGGTGCGCGTTCTGGTGGGGAAGCGGAGAAGGAACACGAGGAGGAAATTTGCAAGGTGAAGATAGAGGAAGGTGCTCCTAATGGGATTCGTGTTGTTGCTACGCCTAATTCTTTGAAACCTATTTCGTTGCCTAAGACTGGTACTGATGGTGGTAGTAATGTTAGTGGGATTGGTATCAAAATGCCGCCACTGGCGTCGTATTCGGATGTTTACGGTGATTTGATTCCACGGAAGGAGTTTAGTTGCGGGAATTGTGGTGATAAATGTGGTTCTGGACACTACAGAAGTACCAAGCAGGGTAATTTCATTATTTGCACGAAATGTTTCAAAAACGGGAATTATGGGGAGAAAAGGTCCATGGAGGATTTCATATTAAATGAGTCAAGTGAAATTAGTGCCAACCACAGTGCTATCTGGACCGAGGGAGAAACTCTTCTTCTATTAGAATCTGTTTTGAAGCATGGGGATGACTGGGAACTTGTTGTTCAAAGTGTTCAAACCAAGACTAAGCTTGAATGTATCTCAAAACTTATTGAGCTGCCATTTGGGGAGCTCATGTTAGGTTCTGCTCGCAGAAATGGTAACAGTTATAGTGTTACTGGAATCATGAACAACGGAAAAGAAGTTCAGTTGTCTTCATCCGATCACCAAGAAACTCCAACAACACAGGAAACTTCAACGATACAGGATCAATCTTCAGACCCTAAAAATGAAAATGAGAAGAATGGAGATGCTGTGGATGAAAGTCCTTCAAAAAGGCAGCGCGTTGCTCCACTTTCAGATTCCAGCAGTTCACTAATGAAGCAGGTGGGACTGCTCTCTACAGTGGTTGACCCTCATATCACAGCTGCTGCTGCTGATGCTGCTATAACAGCACTTTGTGACGAGAATTTGTTCCCAAGGGATATATTTGATGTTGAAGAGGATAATGCTTCTAGTGCAAGCTCGCTTACCAGTTGTTCAGCGAGAGCCCTCAATGGTGAAGATTTAGAGACGGCGGAGAGGTCCACTCAATCAGAAGTAGACGCGGGATCCCCAAAAGACGACATACCATTGACACTGCGTGTAAGAGCTGCCATTGGAACCGCTCTTGGAGCTACTGCTGCTCGAGCAAAGTTGTTGGCGGACCAAGAAGACAGAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGATGGAGAAGTTGCAACAAAAGGTTAAACATTTTGATGAACTTGAGCTTTTGATGAAAAAGGAACATGCTGAATTGGAAGACCTTAAAGATTCGATCTTGACTGAACGGATTGATGTGTTGCGGAGGACATTTAAGTCTGGTATCGCTAAATGGAAGGATTATCCTTGCGTTAAATCTTAG 1689 0.4287 MEVSKEPNSNPGRIDDSELELYTIPSSSKWFAWDEIHETEKTSFKEYFDGTSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVSFLYKVFLFLEHWGLINYGARSGGEAEKEHEEEICKVKIEEGAPNGIRVVATPNSLKPISLPKTGTDGGSNVSGIGIKMPPLASYSDVYGDLIPRKEFSCGNCGDKCGSGHYRSTKQGNFIICTKCFKNGNYGEKRSMEDFILNESSEISANHSAIWTEGETLLLLESVLKHGDDWELVVQSVQTKTKLECISKLIELPFGELMLGSARRNGNSYSVTGIMNNGKEVQLSSSDHQETPTTQETSTIQDQSSDPKNENEKNGDAVDESPSKRQRVAPLSDSSSSLMKQVGLLSTVVDPHITAAAADAAITALCDENLFPRDIFDVEEDNASSASSLTSCSARALNGEDLETAERSTQSEVDAGSPKDDIPLTLRVRAAIGTALGATAARAKLLADQEDREIEHLVATIIEAQMEKLQQKVKHFDELELLMKKEHAELEDLKDSILTERIDVLRRTFKSGIAKWKDYPCVKS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3312 562 MobiDBLite consensus disorder prediction 320 372 - -
Tpr3g3312 562 ProSiteProfiles SANT domain profile. 244 295 IPR017884 -
Tpr3g3312 562 PANTHER SWI/SNF COMPLEX-RELATED 16 550 - -
Tpr3g3312 562 MobiDBLite consensus disorder prediction 320 343 - -
Tpr3g3312 562 CDD SANT 249 286 IPR001005 -
Tpr3g3312 562 MobiDBLite consensus disorder prediction 344 361 - -
Tpr3g3312 562 SUPERFAMILY Homeodomain-like 28 111 IPR009057 -
Tpr3g3312 562 Pfam SWIRM domain 25 110 IPR007526 GO:0005515
Tpr3g3312 562 Gene3D - 245 293 - -
Tpr3g3312 562 Gene3D - 28 114 IPR036388 -
Tpr3g3312 562 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Tpr3g3312 562 SUPERFAMILY Homeodomain-like 246 296 IPR009057 -
Tpr3g3312 562 Pfam Myb-like DNA-binding domain 249 287 IPR001005 -
Tpr3g3312 562 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 16 550 - -
Tpr3g3312 562 Coils Coil 514 534 - -
Tpr3g3312 562 Pfam SWIRM-associated region 1 472 547 IPR032451 -
Tpr3g3312 562 SMART sant 245 293 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3312 Tpr-Chr3 36532702 36542768 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3312 K11649 - gmx:100790238 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3312 3 36532702 36542768 Tpr3g3312 3 36532702 36542768 ECH