Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3299 ATGATGAAGAGGAAAAGAGAAGACCAAGATTGTATGGATATCGTATGGCAAACACCTGCAAATCCTCCGCTACCGCAAGACTACATCTTCCGTAACGGAATTCGATACGTTAGACCTTACTACTTCGAATTTATCGCTCATGTTAAAAATCGATGGGCGGGAAAAACTATCGTAGATTTGTTCGCTGAAGAATTTAAAGGTCGACCTTATGATTATTATGTTAGTGCGGTGAAATGTGGAAGAATTCAAGTTGATGGCGAAATGGTGCCGGTTTCGTATGTAGTTAAGTCATCTCAAAAGATAAGCCATTTTTTACACAGGCATGAACCACCTGTGATGGCTTGTGAGGTTCCTATTCTTTTAAAAGAACCGGATGTGCTAACTGTTTGTAAGCCGGCATCTGTCCCGGTTCATCCATGCGGTCAATATCGTAAGAACACTGTTGTTGGCATTCTTCAAGCAGAGCATGGGCTGGCTCCTGTGTTTCCTATCCATCGACTGGATCGCCTTGTCTCAGGACTCCTTATTATGGCCAGAAATGCTTCAAAAGCTGACAGTTTTAGGCAAGAGATTGAAGCTGGCTTAGTCAAGAAACAGTATATTGCAAAAGTAGTTGGCGAGTTTCCGGAGAATGAGCTAATTGTTGATGCCAATATAGACTATAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTGCAAAGGGGAAGGTCGCCTCTACAAAATTTACTCGAATTAGTTGCAACGGTACTCATAGTATTGTTTTATGTGAACCAGTCAGTGGCCGCACTCATCAGATACGCGTTCATTTACAGTATTCTGGACACCCGATAGCGAATGACATGCTGTACATTTCAGAACAACCTGTTGATCGATCTATTAGTGGATCAGCTGCTGATAGATCATCTCGCATATCAAATGCTTCTTTAACATCAAATTTTGATGAAAATGTGCCCAATGAATGTCACGAAAACTCCAATGAGGATTTTGGTTTTGATTCCATGTGTACGAACTGTCCAAATTTGGCACCAAAAGGATATGATGGTGATGAAGAAGGTTTGTGGCTACATTGTATGAAGTACTCCGGACCTGGATGGACGTATGAATGCCCGTATCCTGATTGGGCGAAACTTTAG 1143 0.4226 MMKRKREDQDCMDIVWQTPANPPLPQDYIFRNGIRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDGEMVPVSYVVKSSQKISHFLHRHEPPVMACEVPILLKEPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPVFPIHRLDRLVSGLLIMARNASKADSFRQEIEAGLVKKQYIAKVVGEFPENELIVDANIDYNAREGRSTAEVRDSAKGKVASTKFTRISCNGTHSIVLCEPVSGRTHQIRVHLQYSGHPIANDMLYISEQPVDRSISGSAADRSSRISNASLTSNFDENVPNECHENSNEDFGFDSMCTNCPNLAPKGYDGDEEGLWLHCMKYSGPGWTYECPYPDWAKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3299 380 ProSitePatterns Rlu family of pseudouridine synthase signature. 164 178 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3299 380 Pfam RNA pseudouridylate synthase 126 274 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3299 380 CDD PseudoU_synth_ScRIB2 102 379 - -
Tpr3g3299 380 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 12 380 - -
Tpr3g3299 380 SUPERFAMILY Pseudouridine synthase 109 378 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3299 380 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 51 291 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr3g3299 380 PANTHER PSEUDOURIDINE SYNTHASE 12 380 - -
Tpr3g3299 380 Gene3D Pseudouridine synthase 110 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3299 Tpr-Chr3 36325605 36333680 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3299 K15454 - gmx:100811500 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3299 3 36325605 36333680 Tpr3g3299 3 36325605 36333680 ECH