Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3276 ATGGATAGTGGTGGTTCTCTCATATTTCCATTGTTTTTACTCTTCTTGTTTTGGTGTATCATTTCATCTGAATCACAATTCATAAGCTACAATACTACCTCAACCATTGTTCCTGGGAAGCTTAATGTTCATTTGGTCGCTCATACTCATGATGATGTTGGATGGTTGAAAACCGTTGATCAGTACTATGTTGGTTCCAACAACTCCATTCAGGGAGCATGTGTTCAAAATGTGCTTGATTCTCTTATACCGGCTTTGTTAGCAGACAAGAACCGTAAATTCATCTATGTTGAACAGGCATTCTTCCAGCGTTGGTGGAGAGCACAGAGTGAAGTTGTTCAGAAAACAGTCAAGCAGCTGGTCAACTCTGGTCAATTGGAATTCATAAATGGAGGTATGTGTATGCATGATGAGGCTGCTACACATTACATTGACATGATTGATCAGACAACCCTTGGACATCGATTCATCAAAGACGAATTCGGCATAACACCAAGAATAGGATGGCAAATTGATCCATTTGGACATTCTGCAGTGCAGGCCTACTTGATGGGAGCAGAGGTTGGATTTGACTCTTTATTCTTTGCACGGATCGACTACCAAGACCGAGCTAAGAGAAAAGATGAAAAAAGTCTTGAAGTTGTGTGGCAGGGCTCTAAGACCTTTGGTTCATCTGCACAGATATTTTCTGATGCGTTCCCTGTGAATTATGAACCTCCCAGTAATTTCTACTATGAAGTAGATAGTGATTCTCCGCTTGTTCAGGACGATATCAATTTGTTTGACTACAATGTCCCTCAAAGAGTAAATGAGTTTGTCGCAGCTGCAATATCACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCCAGTACCAATATGCACATACCTGGTTTAGGCAACTGGACAAGTTTATTAACTATGTTAACCAGGATGGACGAGTTAATGCCTTATACTCAACACCGTCAATATATACTGATGCAAAACATGCTGCAAATGAAGCTTGGCCAATCAAGACGGATGACTATTTTCCGTATGCTGATCGTGTAAATGGCTACTGGACGGGGTATTTTACAAGTAGGCCAGCACTCAAAGGTTATGTTAGATTGTTGAGTGGTTACTACTTGGCAGCAAGGCAGTTGGAGTATTTCAAAGGGAAGAGTGCCTTAGGTCCTAATACTGAATCTTTGGCTGATGCTTTGGCTATTGCTCAACACCACGATGCGGTATCTGGTACATCAAAGCAGCATGTGGCTAATGATTATGCAAAACGGCTTTCAATAGGTTATACAAAGGCTGAGAAAGCTGTTTCAGCATCACTTGCTTTCTTGACAGAGGCAGCAACCAAAACCGGTCATAGGACTCCTCAGATTCAATTTCAACAGTGTCCACTTCTTAACATAAGTTACTGTCCTGCATCAGAAGTTGACTTCTCAGATGGGAAAAATCTGGTTGTCGTCATTTACAATCCTCTTGGATGGAAAAGAGAGGATGTTATAAGGATCCCTGTTGCCAATGAAAATGTCGTTGTTCGGGATTCTAGTGGGAAAGAAATCCAATCACAGCTGCTGCCAATACCTGATTCTTTTCTTGGTTTAAGAAACTACCATGCTGCAGCATACCTAGGAGTATCTCCAAATGTAAACCCTAAATATTGGCTTGCTTTTTCAGCTATTGTTCCTCCACTTGGTTTTAGCACTTACTATGTGTCAAAAGATAAACAAGCAGCTACTATTTCAGATAGACATATAGGATATAGATCAGGGAGTCCGAACGATACGTTTGAAGTAGGCCTAGGAAACTTGAAACTTATTTACTCTGGGAAGGAAGGGAAACTTACTCAATATATCAACAGAAAAAGGAAGGTCAAAGAATCTCTAGAGCAGACATACAAGTATTATGCCTCATATGGGAATGACTTTACAGCAAATGCTCAGGCGTCAGGAGCATATATTTTTCGCCCTAATGGTTCATCAATTCAAATCAACCCCAACGGGACGGTAAAATCATACGTGAATTGTGAACTACTTGTGTTCAATTACCTTACCAATATTCAGTGTAACAAGAGATTAATGAGTTTTCATTTTCAAAAAATTCAGTCTCCTCTCACAGTTTTGCGTGGACCAGTCGTGCATGAAGTGCATCAGCAGATCAATTCATGGATATACCAGACCACAAGACTGTTCAAAGGAAAAGAGCATGCTGAAGTTGAGTTTATTGTTGGACCTATACCGATTGACAATGGAATTGGCAAAGAAATTGCAACCGAGATTAAAACAAATCTAACAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGAACTTGGAAGTGAATCAACCTGTTGCCGGAAATTACTACCCTATCAATCTTGGTATTTACCTAAAAGATAACAACAGAGAGTTTTCTGTATTGGTAGATAGGTCTGTGGGAGGTTCCAGCATCTTAGATGGGCAATTAGAGCTAATGGTTCATAGGAGGATACTTAATGATGATTCCAGAGGTGTTGCCGAGGCACTAAACGAAACAGTTTGCGTCTCTAATAAGTGCACAGGCTTAACAGTTTTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGAGCTAGATGGCGTCGAACATTTGGTCAAGAGATATACTCTCCATTTCTTTTAGCCTTCACAGAGTGTGAAGGTAACTGGGGAGATTCTCATGTCACAACGTTCTCAGGAATAGATTCCTCGTACAGCTTACCAGAAAATGTTGCAATAATAACCCTCCAGGATCTTGGCGATGGAAAAATTCTCCTTCGGCTGGCGCACTTATATGAGATTGGCGAGGACGCGCATCTCTCAGTAAAGTCAAGTTTAGAGCTTAAAAAGGTGTTCCACAATAAACAGATAAACAAAGTAACCGAGGTAAGCTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGATTAGTGTGGCAAGTTAAAGGGTCATCTCGAGAACCGCAGGTGTCGAGGGGAGGACCAGTTGATCCAGAAAAGCTAATTGTAGAACTTGCTCCCATGGAAATAAGGACTTTTATTATCAATATTAACCAATAA 3141 0.4059 MDSGGSLIFPLFLLFLFWCIISSESQFISYNTTSTIVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWRAQSEVVQKTVKQLVNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKDEFGITPRIGWQIDPFGHSAVQAYLMGAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWQGSKTFGSSAQIFSDAFPVNYEPPSNFYYEVDSDSPLVQDDINLFDYNVPQRVNEFVAAAISQANITRTNHIMWTMGTDFQYQYAHTWFRQLDKFINYVNQDGRVNALYSTPSIYTDAKHAANEAWPIKTDDYFPYADRVNGYWTGYFTSRPALKGYVRLLSGYYLAARQLEYFKGKSALGPNTESLADALAIAQHHDAVSGTSKQHVANDYAKRLSIGYTKAEKAVSASLAFLTEAATKTGHRTPQIQFQQCPLLNISYCPASEVDFSDGKNLVVVIYNPLGWKREDVIRIPVANENVVVRDSSGKEIQSQLLPIPDSFLGLRNYHAAAYLGVSPNVNPKYWLAFSAIVPPLGFSTYYVSKDKQAATISDRHIGYRSGSPNDTFEVGLGNLKLIYSGKEGKLTQYINRKRKVKESLEQTYKYYASYGNDFTANAQASGAYIFRPNGSSIQINPNGTVKSYVNCELLVFNYLTNIQCNKRLMSFHFQKIQSPLTVLRGPVVHEVHQQINSWIYQTTRLFKGKEHAEVEFIVGPIPIDNGIGKEIATEIKTNLTSSKTFYTDSNGRDFIERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDNNREFSVLVDRSVGGSSILDGQLELMVHRRILNDDSRGVAEALNETVCVSNKCTGLTVLGKYYFRIDPVGEGARWRRTFGQEIYSPFLLAFTECEGNWGDSHVTTFSGIDSSYSLPENVAIITLQDLGDGKILLRLAHLYEIGEDAHLSVKSSLELKKVFHNKQINKVTEVSLSANQERAEMEKKRLVWQVKGSSREPQVSRGGPVDPEKLIVELAPMEIRTFIININQ* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3276 1046 SUPERFAMILY Families 57/38 glycoside transferase middle domain 357 451 IPR028995 -
Tpr3g3276 1046 Gene3D Glycoside hydrolase family 38, central domain 401 456 IPR037094 GO:0004559|GO:0006013
Tpr3g3276 1046 Gene3D - 601 902 - -
Tpr3g3276 1046 Gene3D - 478 594 IPR013780 -
Tpr3g3276 1046 SUPERFAMILY Galactose mutarotase-like 464 1044 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr3g3276 1046 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 935 1041 IPR041147 -
Tpr3g3276 1046 Pfam Alpha mannosidase middle domain 359 450 IPR015341 GO:0004559|GO:0006013
Tpr3g3276 1046 Pfam Glycosyl hydrolases family 38 C-terminal domain 606 854 IPR011682 GO:0004559|GO:0006013
Tpr3g3276 1046 Gene3D Glycoside hydrolase 38, N terminal domain 41 321 IPR027291 -
Tpr3g3276 1046 PANTHER ALPHA-MANNOSIDASE 21 1045 - -
Tpr3g3276 1046 CDD GH38N_AMII_LAM_like 41 317 - -
Tpr3g3276 1046 Gene3D - 920 1046 - -
Tpr3g3276 1046 PANTHER ALPHA-MANNOSIDASE 21 1045 - -
Tpr3g3276 1046 Pfam Glycosyl hydrolases family 38 N-terminal domain 42 353 IPR000602 GO:0004559|GO:0006013
Tpr3g3276 1046 Gene3D Glycoside hydrolase family 38, central domain 322 400 IPR037094 GO:0004559|GO:0006013
Tpr3g3276 1046 SUPERFAMILY Glycoside hydrolase/deacetylase 30 354 IPR011330 GO:0005975
Tpr3g3276 1046 SMART Alpha_mann_mid_2 358 432 IPR015341 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3276 Tpr-Chr3 36037012 36044269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3276 15 958 Glycoside Hydrolase AT5G13980 65.759 0.0 1307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3276 K01191 - gmx:100798150 1727.22