Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3212 ATGTGGCACCGTTTATCATCTTCAAAACTCAACCTCACAACTTGTAGTTTAGGGTTAGGGTTTCTTAGTCGATCGTTCTCGTCTCAACCAGGGAAGAGATTCGCTGCGTTATGGGGTAACGGCGATTACGGTAGATTGGGTCTCGGTGATTTGAATTCTCAATGGAAACCTGCTATTTGCACTTCCTTCCATAACCAAAACGTTAATTCCATTGCTTGTGGTGGTGCTCACACACTCTTCTTAACAGACAATGGATGTGTTTATGCTACTGGTCTCAACGATTTTGGACAGCTCGGTACATCGGAGAGTAAACAATACTCACTTGTGCCACTTCAAGTTTTTGGGCATGAGAAGAAAGTTGTGCAGATATCTGCTGGTTATAATCATTCGAGTGCAATAACGGAGGATGGAGAACTATACATGTGGGGAAAGAATACAACTGGGCAGCTTGGACTTGGAAAACGGGCTCCCAACATAGTTCCTTTGCCAACTAAAGTGGAATCCTTCGATGGAATCACCGTTAAAATGGCAGCTCTGGGTTCTGAGCACTCGGTGGCTATTAGTGATGAAGGAGAGGCCTTTAGTTGGGGAACGGGAGTGTCTGGTAGACTTGGTCATGGCCATGAGTCAAGTATACTGGGATTCTTCAAAAGTTACAGTGAATACACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGATGCTGACCTCAGCTTGTACTGATGAAAATGGTTCTGTGTTTATATTTGGAGAGAAAGGAATTGACAAATTGCTCTTGAAGGGGATGAGGAATGCAACAAAACCATCATTGATTAGTGAACTTCCATACGCTGAAGAAGTTGCTTGTGGTGGCTATCATACCTGTGTCTTGACAAATATTGGTGAGCTATATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGCATAGGGTCCTCATATGCCATTCATTCACCTGAAAAGGTTCAAGGGCCATTCTTGGAGTCTTCTGTTTTTCAGGTCTCTTGTGGTTGGAAGCATACAGCAGCCGTTTCTGGGGGAAGAGTCTTCACATGGGGTTGGGGAGGTTCTAATGGAACTTTCTCTGATGATGGACATTCTTCAGGTGGACAATTGGGTCATGGAAGTGATGTGGATTTTATAAATCCTTCAAGAGTTTGCTTTGCAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACAGGTGCTATACTCGAGTATACGTAG 1257 0.4352 MWHRLSSSKLNLTTCSLGLGFLSRSFSSQPGKRFAALWGNGDYGRLGLGDLNSQWKPAICTSFHNQNVNSIACGGAHTLFLTDNGCVYATGLNDFGQLGTSESKQYSLVPLQVFGHEKKVVQISAGYNHSSAITEDGELYMWGKNTTGQLGLGKRAPNIVPLPTKVESFDGITVKMAALGSEHSVAISDEGEAFSWGTGVSGRLGHGHESSILGFFKSYSEYTPRLIKDLEGIKVKYVAAGMLTSACTDENGSVFIFGEKGIDKLLLKGMRNATKPSLISELPYAEEVACGGYHTCVLTNIGELYTWGSNENGCLGIGSSYAIHSPEKVQGPFLESSVFQVSCGWKHTAAVSGGRVFTWGWGGSNGTFSDDGHSSGGQLGHGSDVDFINPSRVCFAEDVKALQVSCGFNHTGAILEYT* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 302 354 IPR000408 -
Tpr3g3212 418 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 31 417 - -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 354 417 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 136 187 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 38 81 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 190 241 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 372 414 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 302 351 IPR000408 -
Tpr3g3212 418 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 191 251 IPR000408 -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 190 IPR000408 -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 301 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 177 193 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 193 207 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 291 309 IPR000408 -
Tpr3g3212 418 PRINTS Chromosome condensation regulator RCC1 signature 349 370 IPR000408 -
Tpr3g3212 418 PANTHER OS11G0545800 PROTEIN 31 417 - -
Tpr3g3212 418 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 84 IPR000408 -
Tpr3g3212 418 SUPERFAMILY RCC1/BLIP-II 37 415 IPR009091 -
Tpr3g3212 418 Gene3D - 160 417 IPR009091 -
Tpr3g3212 418 Gene3D - 31 159 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3212 Tpr-Chr3 35278140 35285688 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3212 - - gmx:100811823 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3212 3 35278140 35285688 Tpr3g3212 3 35278140 35285688 ECH