Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3163 ATGAACATGATGATAAAGAAATCCATCAACACCATCTTCACCTACTTCAAATCTTCCACTCCTCATCGGAACCCTAATCTCACCAATCTCCATCCACGCCGCTTTAACTCCACCACTGCACACAATCCTTTCCCTTCCAATCCCATTCATGATCAAGTAATTGATTTTCCTGGAGGAAATGTCAAATTCATTCATGAAATGAGGTTTATATCTGAATCACTTCAACACAGAGTTCCTTGTTACCGTGTTCTTGATGAGAATGGAGAACCAATTTTAGGGACTAATTTTGTGCAGGTTAGTGAAGATGTTGCTGTTAAAATGTATAATGACATGGTTGCACTTCAAACTATGGATACTATCTTCTATGAAGCACAAAGACAAGGTAGAATTTCATTTTATGTAACAACAAATGGGGAAGAGGCTATTAATATTGCATCAGCTGCAGCACTTTCCATGGATGATGTTATTTTCCCTCAGTATAGAGAACAGGGAGTCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAATCAGTGTTTTTCCAACAAGTTTGATAATGGGAAAGGAAGGCAGATGCCGGCCCATTATGGGTCCAACAAGCACAATTACATGAATGTAGCATCAACTGTTGCTACGCAAATTCCACATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGCGCCGTAACTTACTTCGGAGATGGTGGTTCAAGTGAGGGAGATTTCCATGCTGGATTAAATTTTGCAGCGGTAATGGAGGCCCCAGTCATTTTTATATGCCGGAATAATGGATGGGCTATCAGCACCCCTACATCAGATCAGTTTCGAAGTGATGGTATTGTTGTGAAAGGACAGGCATATGGAGTCCGTAGCATTCGTGTAGATGGGAATGATGCTCTGGCCATTTATAGCGCTGTTCAAGCTGCTCGTCAAATGGCAGTTAGCGAAGAGAGACCAATTCTAATAGAAGCCCTTACATATAGAGTAGGACACCATTCCACATCAGATGACTCTACCAAGTATCGTCCCGCCAACGAGATTGAATGGTGGAGATTGTCACGTGATCCTGTGGCGAGATTTAGAAAGTGGATAGAAAGGAATGGTTGGTGGAATGACATTGCCGAGTCTGAGCTTAGGAACAGTTTGAGACAGCAGCTTCTACAGACTATTCAAGTTGCCGAGAGTGTAGAAAAACCTCCACTTGCAGACATGTTTAGTGATGTCTATGATGTTCCTCCGTCGAATCTCCGTGAACAGGAGAAATGGCTGAAGGAGACTGTAAAAAATCATCAACATGTGTACCCAACAAATATTTCCATTTAG 1341 0.4191 MNMMIKKSINTIFTYFKSSTPHRNPNLTNLHPRRFNSTTAHNPFPSNPIHDQVIDFPGGNVKFIHEMRFISESLQHRVPCYRVLDENGEPILGTNFVQVSEDVAVKMYNDMVALQTMDTIFYEAQRQGRISFYVTTNGEEAINIASAAALSMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFDNGKGRQMPAHYGSNKHNYMNVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLSRDPVARFRKWIERNGWWNDIAESELRNSLRQQLLQTIQVAESVEKPPLADMFSDVYDVPPSNLREQEKWLKETVKNHQHVYPTNISI* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3163 446 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 80 441 IPR029061 -
Tpr3g3163 446 CDD TPP_E1_PDC_ADC_BCADC 107 399 - -
Tpr3g3163 446 Pfam Dehydrogenase E1 component 111 405 IPR001017 GO:0016624
Tpr3g3163 446 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 31 445 - -
Tpr3g3163 446 Gene3D - 49 445 - -
Tpr3g3163 446 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 31 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3163 Tpr-Chr3 34828143 34831992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3163 52 284 Acyl Lipid Metabolism Gene Families AT5G09300 79.399 1.75e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3163 K00166 - gmx:100779198 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3163 3 34828143 34831992 Tpr3g3163 3 34828143 34831992 ECH