Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3159 ATGGAATCAGAGAAACCAACCTTTACAACTCTCATTCTCGGATCATACAAAAAACCTTCATTCTCAATCTTACTTCTCTTCTTCACCTTCCTCGCAATCCTCTCTCTTCAATTTTCAACTCGCTCTCTTTTCCCTCTTTCAATCCTCATTTCTCAACAACAACAAAAATCTTCCCTCGATCCCACCACCTGCTCCGCTTTTTTTCACGATGTTCCTCCCAGAAAAGTCATCATGTCCATCGTTGATTTCGGTGGCGTTGGCGATGGTAAAACCTCCAATACGCAGTCGTTTCAAAGAGCGATTCGGTACATGCAACGCTTTCAAAATAAAGGTGGATCACAGCTTAATATCCCCGCTGGAACGTGGCTTACCGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCATGGTGCTGTTCTTCTCGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCTTTGCCATCTTATGGAAGGGGAAGAGAGAGATTAGGAGGAAGACACATTAGCCTTATACATGGAAACGGTGTACGTAATGTTGTTATCACAGGAGAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACACTGGAGCACACAAGAGGCCACCTCCTTGAACTTATGAACTCAGAAAATGTTCTTGTTTCAAACCTTACTTTTAGAAATTCTCCTTTTTGGACCATCCACCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTCAATGCCCCAAATACGGATGGCATAGATCCAGACTCGAGTACCAACGTGTGTATTGAAGATAATTACATAGAAAGTGGGGATGATCTCGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCTAAGCCCAGCACAAACATCATAGTGAGGAGAGTTTCAGGGACTACCCCAACTTGCTCTGGAGTAGGAATAGGCAGTGAAATGTCTGGTGGAATTTCAAATATTATAATCGAGAATTTGCACGTGTGGAATTCTGCAGCCGGCGTTCGCATAAAATCTGATAATGGCAGAGGCGGGTATATAAAAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTGAAGATACCCATTAGGTTCAGTAGAGGTTCGAATGACCATCCTGATGATGGGTGGGATCCAAAAGCCGTTCCTAGATTTGAAGATATTTTAATAAGCAATGTGGTCAGTGTAAATTCAACAAAATCTGCAGTTTTGGAAGGTGTGGAGGGTTCATCATTTGAAGGCTTGTGCTTCAAGAATATTACTCTTCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTCGCTGGTTTTGCCAATGGGGTATTCCCCGTTCCATGTCCTGAGTTGCAGAACAATGGCACTTCATCCTGGTTTTCTCGAGTCCTGCTCAAGCGGATTATTTTGCTACGAGTGAAAAATGAGATGCTCTCTCTCTCATCCTGGTTGGTGCCAGCAGTGAACTCCAAGACTGTCATAACTTGTATTTATTGCAACCCCAAAACACTCATCTGCAAAGACTTGTTACCAATAGTCAAAACCTTAAAAAATGGTATATTTATGTATTGACAAAATCTGAGCATCAAGATGAATATGAAATTACATTCTTTATTGTGCTTCATGTTCCTCATTGTAGCTTTTAGCAGCATACAAATATGTTTAGCAGACTGTGATAATATACAGGACACATGCCCCACATCACCATCAGAAAAACATACCACATCCATCAATGGTCTCACCTGCAATAACCCAGCTGACAAATCTGCTCATGATTTCAAAACCATGGAATTAAGCAAATCTGGTTCAAGAGACAAATTTGGTTCATCAATCAACATTGTGACAGCTTCAAAGTTCCCTGGCCTCAACACTCTTGGTATGTCAATTGGTAGAACAGACATTGAAGTGGATGGGATTGTGAACTTCCATAATCATCCAAGAGCTAGCGAGATGATCTTTGTTAAGGAAGGTGTATTGGAAGTTGGATTTCTTGATACACAAAACAAGCTTTTCCAGAAGGCTTTAAAAGAAGGTGATGTGTTTGTGATCCCTAAGGGATTGTTCCATTTCTTTCTAAATCGCGGTGTAGAAGTTACAACTGTGTTTTCTGTGTTTAATAGTCAAAATCCAGGGTTGGGATCTCCTACAGCCACACCTTCTGAATCAGTTGAGAAGATAAAGAGAAAGCTTATATCACTTTCTGAGTCAGAAGTTGATAGTGTTGATGATTTGAGTTTGATTGTGTCTGAGATTATTTACAGTTAG 2316 0.4093 MESEKPTFTTLILGSYKKPSFSILLLFFTFLAILSLQFSTRSLFPLSILISQQQQKSSLDPTTCSAFFHDVPPRKVIMSIVDFGGVGDGKTSNTQSFQRAIRYMQRFQNKGGSQLNIPAGTWLTGSFNLTSDFTLFLHHGAVLLGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGVRNVVITGENGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAKPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNIIIENLHVWNSAAGVRIKSDNGRGGYIKNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFEDILISNVVSVNSTKSAVLEGVEGSSFEGLCFKNITLLGVALSATWHCEYVAGFANGVFPVPCPELQNNGTSSWFSRVLLKRIILLRVKNEMLSLSSWLVPAVNSKTVITCIYCNPKTLICKDLLPIVKTLKNGIFMY*QNLSIKMNMKLHSLLCFMFLIVAFSSIQICLADCDNIQDTCPTSPSEKHTTSINGLTCNNPADKSAHDFKTMELSKSGSRDKFGSSINIVTASKFPGLNTLGMSIGRTDIEVDGIVNFHNHPRASEMIFVKEGVLEVGFLDTQNKLFQKALKEGDVFVIPKGLFHFFLNRGVEVTTVFSVFNSQNPGLGSPTATPSESVEKIKRKLISLSESEVDSVDDLSLIVSEIIYS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3159 770 PANTHER PECTIN LYASE-RELATED 13 475 - -
Tpr3g3159 770 Gene3D - 64 455 IPR012334 -
Tpr3g3159 770 Pfam Cupin 623 745 IPR006045 -
Tpr3g3159 770 SMART Cupin_1_3 617 740 IPR006045 -
Tpr3g3159 770 Pfam Glycosyl hydrolases family 28 174 454 IPR000743 GO:0004650|GO:0005975
Tpr3g3159 770 SMART pbh1 245 271 IPR006626 -
Tpr3g3159 770 SMART pbh1 334 355 IPR006626 -
Tpr3g3159 770 SMART pbh1 272 304 IPR006626 -
Tpr3g3159 770 SMART pbh1 363 384 IPR006626 -
Tpr3g3159 770 SMART pbh1 306 328 IPR006626 -
Tpr3g3159 770 ProSitePatterns Germin family signature. 654 667 IPR019780 GO:0030145
Tpr3g3159 770 PRINTS Germin signature 659 679 IPR001929 GO:0030145
Tpr3g3159 770 PRINTS Germin signature 689 709 IPR001929 GO:0030145
Tpr3g3159 770 PRINTS Germin signature 722 737 IPR001929 GO:0030145
Tpr3g3159 770 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 475 - -
Tpr3g3159 770 Gene3D Jelly Rolls 572 760 IPR014710 -
Tpr3g3159 770 SUPERFAMILY RmlC-like cupins 624 727 IPR011051 -
Tpr3g3159 770 SUPERFAMILY Pectin lyase-like 70 469 IPR011050 -
Tpr3g3159 770 CDD cupin_OxOx 573 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3159 Tpr-Chr3 34786728 34791675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3159 1 468 Glycoside Hydrolase AT4G33440 68.230 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3159 - - mtr:MTR_3g096330 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3159 3 34786728 34791675 Tpr3g3159 3 34786728 34791675 ECH