Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3139 ATGAATCTTCAAATTTCAAATAGCATCGATTCTTCACTTCAACTCCCAAAACCCTTATCCTCTCATAAAACAATCTTCTTCACCCAATTCCCTCACTCTTCTCTTTCTCAACACATTCTCAGAACCAAATTTCCTCACAATAAAAACCCTCGCAAATGCAAACTCAGAATCACCGCTTCCAATTCTCTTTCACTTTCATCCTCCAACCAACAAGACTCCGAATCTATTCAGCTTTTCGAGAAACTGAAGGAATCTGAAAGGGAACGGGTGAATGAGTTAGAAGAACTAGAGAGAAAGGCTAATGTGCAGTTAGACAGGCAGCTTGTAATGGCTTCTTCATGGAATAGAGCTTTGTTGACTTTGCGTGGAAAATTGAAGGGAACTGAATGGGATCCTGAAAATTCACATAGGATAGACTTCAGTGATTTTTTGAAATTGCTTGATTCAAATAATGTTCAGTTTATAGAGTATTCCGATTATGGACAAACTTTATCAGTAATTTTACCATATTATAAGAATGGGAAAACATCAGGCGCTGAAGGGAATCCTAAGGATATTGTTTATCGGCGTCATGCAGTTGAACGAATGCCGATTGATTGTTGGAATGATGTTTGGGGAAAGCTGCATCAACAAATTGTAAATGTTGATGTCATTAATGTAGATTCTGTACCTGCTGAAGTATACTCAACGGTTGCAACTGCAGTCATATGGTCTATGCGTCTTGCCCTGGCTGTTGGATTTTATGTTTGGATTGATAATTTGATGAGACCAATATATGGAAAGTCGATACCTTATGATTTGGGAACTCCTCCTCCCACCCCACAAGCTAAGGTGCCCGTCTTAAGAAGACATGCACTTGGTTCTCTAGGCAAGAGTAGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAAAGGGAACTACAAGAGATTGTCCGAATTTTAAAGAATGGCGAGGAGTTTCAAGACAAAGGAATCTATTGTCCAAAAGGTGTACTTCTTCATGGACCCCCTGGAACTGGTAAAACTTTACTGGCTAAAGCCATCGCTGGTGAAGCAGGGTTGCCTTTTTTTGCTGCTAGTGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGATCTTTTTTCTAATGCAAGATCATTTGCACCTTCGATAATCTTTATTGATGAGATTGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTCCTTGTGATAGGTGCTACGAATAGATTGGATATTATTGATCCTGCTCTTTTGAGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTACCTTTAAAAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTATGAATAAGTCTTTTCGCTCAGAAGAAGAAAAGGATACTCTACTTAAGGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAAAATATACTGAATGAAGCTGGAATTTTAACGGCCAGGAAGGATCTGGATTACATCGGCCGTGATGAGTTGCTTGAGGCCTTAAAAAGGCAACAAGGAACATTTGAAACAGGGCAAGAGGATACTACAAAAATTCCTGAAGAACTGAGACTGAGATTGGCTTATAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAACCCCACCGCCCTTTTGTCGAGACTGATATAACATCTATTCGCAGCCAGCCAAATATGTGTTATAATGAAGTTTCTGGAAAGGTTTTTAAAAGGAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTCGGGATCGACAACTTGTGTTGGATGTCTGCAAATGCAACAGTAGAAGCTTCAAGGCTTGTAGAATTTTTGATTCTACAGACTGGAATGACTGCCTTTGGGAAAGCATATTACAGAAACGAAACCGATCTTGTGCCTAATCTTGCAGTGAAACTTGAAGCACTACGAGATGAGTATATGCGTTATGGTACAGAGAAGTGTTCATCTGTGCTAAGAGAATACCATTCAGCAGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCGTGTAGCTCAGCCTTTTGTGAGTCCAATTGATGAATATGGAGCACTAATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCTGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTTCGACCTTTGGAGCACCACGCCCTACGCAGACGCAAATTGTCAAGGATGACACATGGAAACTAGTAGATGATATCTGGGATAAAAAGGTTCAAGATATTAGAGATCAAGCTTCAAGGGAGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGTCATTTCCTCTGA 2544 0.4049 MNLQISNSIDSSLQLPKPLSSHKTIFFTQFPHSSLSQHILRTKFPHNKNPRKCKLRITASNSLSLSSSNQQDSESIQLFEKLKESERERVNELEELERKANVQLDRQLVMASSWNRALLTLRGKLKGTEWDPENSHRIDFSDFLKLLDSNNVQFIEYSDYGQTLSVILPYYKNGKTSGAEGNPKDIVYRRHAVERMPIDCWNDVWGKLHQQIVNVDVINVDSVPAEVYSTVATAVIWSMRLALAVGFYVWIDNLMRPIYGKSIPYDLGTPPPTPQAKVPVLRRHALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNGEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTDFVEMFVGVAASRVKDLFSNARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDIIDPALLRKGRFDKIIRVGLPLKDGRLAILKVHAMNKSFRSEEEKDTLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQQGTFETGQEDTTKIPEELRLRLAYREAAVAVLACYFPEPHRPFVETDITSIRSQPNMCYNEVSGKVFKRKSDYINSIVRSCAPRVIEEEMFGIDNLCWMSANATVEASRLVEFLILQTGMTAFGKAYYRNETDLVPNLAVKLEALRDEYMRYGTEKCSSVLREYHSAVETITDILLEKGKIKAEEIWDIYKSAPRVAQPFVSPIDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTQTQIVKDDTWKLVDDIWDKKVQDIRDQASREIEEEKEKPQLLMASHFL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3139 847 Coils Coil 817 837 - -
Tpr3g3139 847 SMART AAA_5 340 481 IPR003593 -
Tpr3g3139 847 Coils Coil 76 103 - -
Tpr3g3139 847 CDD AAA 311 479 - -
Tpr3g3139 847 Coils Coil 504 524 - -
Tpr3g3139 847 ProSitePatterns AAA-protein family signature. 449 467 IPR003960 GO:0005524|GO:0016887
Tpr3g3139 847 Gene3D Peptidase M41 562 749 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr3g3139 847 PANTHER METALLOPROTEASE M41 FTSH 54 815 - -
Tpr3g3139 847 Pfam AAA+ lid domain 508 548 IPR041569 -
Tpr3g3139 847 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 54 815 - -
Tpr3g3139 847 Gene3D - 480 556 - -
Tpr3g3139 847 Gene3D - 288 478 IPR027417 -
Tpr3g3139 847 Pfam ATPase family associated with various cellular activities (AAA) 344 478 IPR003959 GO:0005524|GO:0016887
Tpr3g3139 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 553 IPR027417 -
Tpr3g3139 847 SUPERFAMILY FtsH protease domain-like 569 749 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3139 Tpr-Chr3 34619811 34628672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3139 305 588 Miscellaneous Gene Families AT3G47060 46.831 1.18e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3139 - - gmx:100804743 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3139 3 34619811 34628672 Tpr3g3139 3 34619811 34628672 ECH