Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3046 ATGAAGAATCAGAACTTGATCCCATCTCTTCCAGACGACGTCGCCGTAAACTGTCTCGCACGTGTCCCTCGCTCACAACACACAACTCTCTCTCTCGTTTCAAAACCAATCCGTTCTCTCATATCTTCTCCACTCTTCTTCACCGCTCGTTCTCTCATTCACTCTACCCAACACATCCTCTACCTCTCACTTCGCTCACGCGCCACCACTCTTCAATGGTTCACGCTCCACAATAATCACCGCCTCATTCCTCTACCTCCTCCCCCTTCTCCCGCTCTTGGCTCCTGTTACGCCGTCATCGGCCACACAATCTACATCATCGGTGGTTCAATCAACGATATCCCTTCCCGTCATGTTTGGATCCTCGATTGCCGCTTCCACCGCTGGCTTCCCGGTCCTTCCATGCGTGTCTCACGTGAATTCGCCGCTGCTGGTGTTATTGACGGCAAAATTTACGTAATCGGCGGTTGCGTTCCTGATAATTGGTCTAAATCAGCTAATTGGGCGGAGGTTTTCGATCCAGCCACTAGCCGCTGGGAAGGCATTCCTAGCCCGCCGGAGATTCGTGAGAAGTGGATGCATGCCAGTGCTGTCATGGACGGCAAGGTTTACGCCATGGCTGATCGCGGTGGTGTTTCACTCGATCCAAGTAGCCGCGCGTGGGAGAGCGTGGGGACCGAGCTTGACCTCGGGTGGCGAGGGAGGGCTTGTGTTGTCAATGGAATTCTGTATTGCTATGATTACTTGGGGAAAATCAAAGGTTTTGATGTGAAAAATAGTTTGTGGAAGGAATTGAAGGGTTTGAGTAAAGGTTTGCCGAGGTTTCTTTGTGGAGCTACAATGGCTAATGTTGGTGGAAAATTGGTTGTGGTTTGGGAGTGCCATGGGTATTTGAATAGGAAGGGGAAAGAAAAAGAAATGGAGATTTGGTGTGCTGAGATTGCTGTGAATAAGAACAAGGATGGTGAATTGTCGGGTGAAGTTTGTTGGGTAAAAAATGTTCTCTCTGTTCCAAAAGGATCCTCCATTGTTCATTGTTCTTCTGTTGCCTTGTGA 1056 0.4943 MKNQNLIPSLPDDVAVNCLARVPRSQHTTLSLVSKPIRSLISSPLFFTARSLIHSTQHILYLSLRSRATTLQWFTLHNNHRLIPLPPPPSPALGSCYAVIGHTIYIIGGSINDIPSRHVWILDCRFHRWLPGPSMRVSREFAAAGVIDGKIYVIGGCVPDNWSKSANWAEVFDPATSRWEGIPSPPEIREKWMHASAVMDGKVYAMADRGGVSLDPSSRAWESVGTELDLGWRGRACVVNGILYCYDYLGKIKGFDVKNSLWKELKGLSKGLPRFLCGATMANVGGKLVVVWECHGYLNRKGKEKEMEIWCAEIAVNKNKDGELSGEVCWVKNVLSVPKGSSIVHCSSVAL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3046 351 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 3 334 - -
Tpr3g3046 351 Gene3D - 51 323 IPR015915 GO:0005515
Tpr3g3046 351 SMART kelc_smart 150 201 IPR006652 GO:0005515
Tpr3g3046 351 SMART kelc_smart 103 149 IPR006652 GO:0005515
Tpr3g3046 351 Pfam F-box domain 8 46 IPR001810 GO:0005515
Tpr3g3046 351 SUPERFAMILY F-box domain 3 87 IPR036047 GO:0005515
Tpr3g3046 351 SUPERFAMILY Kelch motif 77 318 IPR015915 GO:0005515
Tpr3g3046 351 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Tpr3g3046 351 Pfam Kelch motif 95 136 IPR006652 GO:0005515
Tpr3g3046 351 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3046 Tpr-Chr3 32979531 32981832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3046 10 335 Miscellaneous Gene Families AT4G33900 35.775 6.34e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3046 - - gmx:100795539 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3046 3 32979531 32981832 Tpr3g3046 3 32979531 32981832 ECH