Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3040 ATGGCTGAAGATAGTCCACGTCTTGGAGGGTTTTCAGCTGGTCTGGCTGTTATATTGAATGACGAGGATAGTAAGAAGAATTTGCCGAAAACTCGACTTCTTTCTTGCTGTGATGATTTGGGTGAACAGTCTGTGGAAAGAACGCTAGAATATGTGTTTGGTCTTCCCAACAGATCATTAAGTTCGTTGGATGGTCCGGTTGACAGCAGTTTTATTCGTTCTGTCATTAGGAATCTTTTTTCAAGATATAATGCAAATTCGGGTGATTCTTCTAGTGAAAAAGATATGATATGTAGACCAGATGTTGTAGGCTTAGAAGAATACACCATATGCGGTGATATTAAAATTGTCAAACCACCTTTTCTTATAGAGAGCTTGGAAATGTTCAGTAGTGTCCGGGCTAATACATGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCTGGCATACAGCAGATTGGTTGGGCCACTAATTCTTGCCCTTTCACTGACCATAAAGGTGTTGGCGATGATGAGGATTCATATGCCTATGATGGTAGACGAGTTAGCAAGTGGAACAATGATGCTGAGACATATGGTCAGTCATGGGTTGTTGGTGATGTCATTGGATGTTGCATAGATTTGGAACGAGATGAAATAGTATTCTACAGGAATGGCATTTCACTTGGGGTGGCTTTCCAAGGTGTTCGAAAAATGGGTCCTGGTTTTGGTTATCATCCAGCAATCTCTCTCTCCCAGGGTGAAAGATGTGAATTGAACTTTGGGGCTCGACCCTTCAAGTACCCAATTGAAGGCTACCATCCTCTCCAGACTCCTCCCTCCAAGAGCTACTTTGTCACGCGATTGCTACAGTGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAACATTCTTTAGCTCAGAAATTGAGAAGAGCAAAAAGGTTTGTTTCATTGGAAGAAATATTTCGTCCTGTCTCGTATGCTATATGTGAGGAATTATTCTGTATACTTGAAGATGATGTTGGACATGCAGAGTATATGGTTTGGGGTCCATTGTTGTCCTTCATGTTTGAAGTTTTTGAATTGCATGCACCCCATGACTATTCAAGCTTGGATAAAGTAGTTGAAGTACTGCTACAATTTCAAGGATCACATGTGCTGTTTGAAAACATCATAAACGCCCTTTCATGCGGTTGTAAAGTGGCACAACTAGTTCTAACTGAATGTCCTTACTCTGGATCATATTCTTACCTTGCATTGGCATGTCATCTACTAAGACGGGAGGAACTTATGGTGCTTTGGTGGAAATCACCAGATTTTGATTTTCTGTTTGAAGGTTTTATGTCGCAAAAAACTCCAAACAAGCAGGATCTTGAGTCCATGATACCCACTGTTTGGTGGCCCGGTTCATGTGAAGATACATGTTGTGAAAGTAACATGATGTTGGCAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATCGGGACCTCTGTCGCTTAGTTATACAATTTATACCTCCTACAACACCTCCCCAATTACCTGGAGCAGTATTTAGGACGTTTTTACAAAACCTTCTACTGAAGAACAGAGGGGCAGAAAGAAATGTCCCACCACCTGGAGTTTCTAGCAATACGGTTCTTGTTTCAATTTATACAGTTGTGCTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTACAAAGCAGATGTTGGTTTCCTTCATAGAGGCGGTCAACAAAGTTTTCCCATACAATTGTTTTTAAAAAATGATCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTGCAATTGATCATGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCTTGGATAATGAAGAAATCAGAGTGACTCATTCAACCAGACAGAAGCCGTGCTGTTGTTCTAGTTATGATGCTGAATTTTCAAGGAATCTGAAGGTTCCAGCTAAATACCTGGCCAAAGGGTCTCGGGCCCACTGTAGCTCTATTCCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGAAGTTTGAATGATGAGATAACAGATAAACCAAGTTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATCTGAAATCTGTACCAAAGGATACTGATATGTTTATGGATACGCTACAAGAAGAAGAGTTACTCGATGCTTTGTTGTGGCTGTATCAAGTTGGTCTTGCTCCAAATTTTAAGCAGTCATCGTACTACATGACTCATCAGGTACAATCAATCTCCATGTTGGAGGAAGTTGATAAACAAATAAAGGAGCGAGCTTGTGGTGAAAAATTGAAGCATTTGAAAGAAACTCGTAATGAGTATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTATCGTATCTCTCTGTTATCTCGATGGAAGCAACGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCCGTATTTATCTACACCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTCTTGCGGAAAAGTGATCCTCCATTTGTTCCGTCCACAATTTTGATCAAGCGTGGACTTGTTTCATTTGTCACTTTTGTAGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTCAGGGATCTTCTTCTGCAGTCTATATCCGTCCTGGTGCAGTACAAGGAGTATTTGGCAATTTTTGAGAGCAACGAGGCAGCCAACCAAAGGTTGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACAAACATACTTCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCATCATCAATTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGCATAAATGATGAAGCATTATTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGGCCATGACAGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAGAAGTACCAGGTAATGGAGTTTCAACAAAGGAAATGTGGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTTTGGAGTTCTGCACTCATGAGATTCCTCAAGCATTCCTGTCTGGTCCAGAAACAAACCTAAGGAGGTTAACTGAGTTGATTGTATTTATCTTGAATCATACTACTTCTTCAGCCGATGCGGAGTTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTTCAGAAAAAGTAAATCGAGGCATGATATTGGCACCTCTCGTAGGGATCATGTTAAATTTATTGGATGCTACTAAGTTGGTTGAGTATCAAGAGAACAATGATCTTGTGGATGTTTTTCTAAGCATGAATTGTGCAGAGACTGTTCTTTATGGTTTCCAATATCTTGTGGATTATAACTGGGATGGATCATGCCGAGGGGAAGCATACATGGGAAAGTATAAGGAGCTAGAAAATTTTCTGACCTTCCTTGCTTGCCGCACTATGTCTGAACATGATGAAGTGGAAAGCGTTGTAGATACGACGGACCTGGATGATAACTTATGCTGCATATGTTACGCTTGTGAAGCAGATGCCCAGATTGCACCTTGTTTACATAGGTCTTGTTATGGCTGTGTAAGTAGGCATCTTTTGAACTGTCAAAGATGTTTCTTTTGCAATGCTACAGTAACAAATGTTAGCAGAATTAACGAGAAGACAGGCTAA 3804 0.4059 MAEDSPRLGGFSAGLAVILNDEDSKKNLPKTRLLSCCDDLGEQSVERTLEYVFGLPNRSLSSLDGPVDSSFIRSVIRNLFSRYNANSGDSSSEKDMICRPDVVGLEEYTICGDIKIVKPPFLIESLEMFSSVRANTCVWKGKWMYEVMLETSGIQQIGWATNSCPFTDHKGVGDDEDSYAYDGRRVSKWNNDAETYGQSWVVGDVIGCCIDLERDEIVFYRNGISLGVAFQGVRKMGPGFGYHPAISLSQGERCELNFGARPFKYPIEGYHPLQTPPSKSYFVTRLLQCWSRLLDMHSVERAEHSLAQKLRRAKRFVSLEEIFRPVSYAICEELFCILEDDVGHAEYMVWGPLLSFMFEVFELHAPHDYSSLDKVVEVLLQFQGSHVLFENIINALSCGCKVAQLVLTECPYSGSYSYLALACHLLRREELMVLWWKSPDFDFLFEGFMSQKTPNKQDLESMIPTVWWPGSCEDTCCESNMMLATTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNTVLVSIYTVVLHFLSEGFALGDICGWLKSYKADVGFLHRGGQQSFPIQLFLKNDPHRTDISRLGGSYTHLSKLHSAIDHEREVVQWDEGCLDNEEIRVTHSTRQKPCCCSSYDAEFSRNLKVPAKYLAKGSRAHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHLKSVPKDTDMFMDTLQEEELLDALLWLYQVGLAPNFKQSSYYMTHQVQSISMLEEVDKQIKERACGEKLKHLKETRNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLVSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKEYLAIFESNEAANQRLPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFQRLLKEACINDEALFSSFLNRLFNTLSWAMTEFSVSVREMQEKYQVMEFQQRKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELIVFILNHTTSSADAEFFDLSLRRHNQSSEKVNRGMILAPLVGIMLNLLDATKLVEYQENNDLVDVFLSMNCAETVLYGFQYLVDYNWDGSCRGEAYMGKYKELENFLTFLACRTMSEHDEVESVVDTTDLDDNLCCICYACEADAQIAPCLHRSCYGCVSRHLLNCQRCFFCNATVTNVSRINEKTG* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3040 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1264 IPR013083 -
Tpr3g3040 1267 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
Tpr3g3040 1267 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1266 IPR045129 GO:0004842
Tpr3g3040 1267 SUPERFAMILY Concanavalin A-like lectins/glucanases 103 266 IPR013320 -
Tpr3g3040 1267 Gene3D - 113 289 IPR043136 -
Tpr3g3040 1267 CDD RING-HC_RNF123 1213 1253 - -
Tpr3g3040 1267 CDD SPRY_RNF123 131 259 IPR035773 -
Tpr3g3040 1267 SMART SPRY_3 140 262 IPR003877 GO:0005515
Tpr3g3040 1267 Pfam Ubiquitin elongating factor core 729 951 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Tpr3g3040 1267 ProSiteProfiles B30.2/SPRY domain profile. 76 263 IPR001870 -
Tpr3g3040 1267 Coils Coil 1262 1267 - -
Tpr3g3040 1267 Pfam SPRY domain 142 260 IPR003877 GO:0005515
Tpr3g3040 1267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1266 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3040 K12169 - gmx:100800617 2243.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3040 3 32910303 32921279 Tpr3g3040 3 32910303 32921279 ECH