Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3030 ATGTTGACCTTGACCTTCTCCAAGTTCAAGAAAGCATTCACTCCGATCCCACCTTGTTCCTGCGGCGGCTTCCGCCGACCCCCCAACAATTCTCCCCGATCATTTTCCGCTGCTTCCGACTTACTAGGTCTTCGTTTCTGCATCTGGGTTGCACTCAAATTCGACACTTTCACCGATGAACCCTATTATTTGGTTAGTGATTTTCTTGCCCGTAACAATTTGCATTCTATTTACTGGGAAGCTCTTGAGCTTCTTAATAAAAAAGGGATTTTGTTAACTTCAGATTCTGTTAGAGCTTTGGTTAGGTCTTATTCTCATTTGGGTCAGACCAATAAAGCTATAGAAACTTTCGGTAGAATGCGCGAATTGGGTATTGTTCCTGATGCTCATATATATAACACAATTTTGAGAGATGTGTTGAGGAAACAGTTATTTGAGCTTGCTTTTGCATTGTATAATACTATGGTTAAATGCAATGTTGTTCTTAATGATTATACTTATAATATGTTGATTGATGGGTTTTGTAAAAGTGGTAATGTTAAGGGTGCACTTGAGATGGTTGATGAAATGCAAAAGGTTAATCTTGTTCCTGATGCTTTATCGAATACCTCTGTTCTTTATGGTTTATGCCAGGCGAAAAATATGGATGAGGCACATAAGTGGTTTAATACGATGAAAGAAAATGGGTACCCGCCGGATGTTGTTTCTTGTAATGTTTTGCTTAATGGGTATTGTCAGCTGGGGAGGTTAGATGAAGCAGTTTCTTTTGTACGGTCCATGAAGATAGATGGTTTCTCGCTTAATCAAAATGGCTATTGTTCTCTTATTAATGCATTTTTTAGAGCCACGAGATATAGTGAAGCACACGCGTGGTATACAAGGATGTTTAAGGAGGGCATTGTGCCTGATGCTGTTACGTACGCCATTATGATACGTGGTCTGTCGGATGAGGGCAGGGTTGGTGAAGCTATTAGGATGTTAGATGAGATGACTCAGATAGGTTTAACTCCTGATGCTCATTGCTACAATGCAATAATTAAAGGTTTATGTGATGTAGGTCTTTTGAATCGAGCGCAATCTCTTCGTCTTGAGATTTCTAAGGAAAATGTTTGTACGCACACGATTATCATATGTGAAATGTGTAAGAGAGGAATGATTGATGAAGCACAAGAATTATTTCATCGGATCGAGAAGCTTGGATTCGTTCCTTCAGTTGTGACCTTCAATGCGCTTATAAATGGACTGTGCAAAGCCCATAAACTTGAGGAGGCAATCCTTTTGTGTTACAATATGGAGATGAGGAGAACATATTGGTTATTTTTAAGGGGTCCCGATCTCCAGAAAAAGGTGCAGCAAATGTGTGAAGACGGGCAATTTTTGAATGCTTACGAGTTTCTCACTCTTACCAATAGTAGGGTTAAGCCTGACATTATTACATACAACATTCTAATCAATGCCTGTTGTAGGGCTAGTGAGATTCAACGCGCTCGCCACCTTTTTAAGGAACTGCAAAAGAATGGTCTCTCACCCGATTGTGTTACTTATGGGACACTTATTAAAGGAGTTGAAAGCGAAGAGGAAGCCTTTAACATTTTTAATCGTATGCAGGAAGATGGCTGTGAACCTACCCTTTCAGTTTATAGAACACTTATGACTCGGTTGTGTAAAAAGAGCAAGGTCTCGCTGGCATTTAATCTTTATTTCAAATATCTGAAGAGCCTCCCAAGTCGGGACAATGATTCAATCCGTGCTCTAGAGGAATATTTAGTCGGAGAAAAATTGGAACAAGTGATTCGTGGTTTACTTGAACTGGACTTTAGGGCCAGAGATTTTAATTTAGCTCCATACACAATTCTACTTATTGGATTCTGTCACGTAGAAAAAGTAGACGAAGCATTAATTATATTCTCAGTTCTTGACGAGTTCAATATCAAAATCAACGCTACAAGTTGCGTACATTTGATCAAAGGTCTTTGTAAGAAAAGTAGGCTATATGAAGCAAGAAAAATATTTCTCTACAGTCTTGACAAAGGTTTTATGTTGAGGCCAAAAATTTGTAACCACCTCCTCAAGCATCTTGATTCCAAAGATTATAAGGATTGGGTAGTTGATCTTATTGGTAGGATGACATCTTTTGGATACCATATACCCCAATACCAAAAAAGAAAGCAAAGAACAAATGTTCTCTGA 2190 0.3886 MLTLTFSKFKKAFTPIPPCSCGGFRRPPNNSPRSFSAASDLLGLRFCIWVALKFDTFTDEPYYLVSDFLARNNLHSIYWEALELLNKKGILLTSDSVRALVRSYSHLGQTNKAIETFGRMRELGIVPDAHIYNTILRDVLRKQLFELAFALYNTMVKCNVVLNDYTYNMLIDGFCKSGNVKGALEMVDEMQKVNLVPDALSNTSVLYGLCQAKNMDEAHKWFNTMKENGYPPDVVSCNVLLNGYCQLGRLDEAVSFVRSMKIDGFSLNQNGYCSLINAFFRATRYSEAHAWYTRMFKEGIVPDAVTYAIMIRGLSDEGRVGEAIRMLDEMTQIGLTPDAHCYNAIIKGLCDVGLLNRAQSLRLEISKENVCTHTIIICEMCKRGMIDEAQELFHRIEKLGFVPSVVTFNALINGLCKAHKLEEAILLCYNMEMRRTYWLFLRGPDLQKKVQQMCEDGQFLNAYEFLTLTNSRVKPDIITYNILINACCRASEIQRARHLFKELQKNGLSPDCVTYGTLIKGVESEEEAFNIFNRMQEDGCEPTLSVYRTLMTRLCKKSKVSLAFNLYFKYLKSLPSRDNDSIRALEEYLVGEKLEQVIRGLLELDFRARDFNLAPYTILLIGFCHVEKVDEALIIFSVLDEFNIKINATSCVHLIKGLCKKSRLYEARKIFLYSLDKGFMLRPKICNHLLKHLDSKDYKDWVVDLIGRMTSFGYHIPQYQKRKQRTNVL* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Tpr3g3030 729 PANTHER ATPASE EXPRESSION PROTEIN 3 310 571 - -
Tpr3g3030 729 PANTHER ATPASE EXPRESSION PROTEIN 3 525 679 - -
Tpr3g3030 729 PANTHER ATPASE EXPRESSION PROTEIN 3 82 466 - -
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 440 573 IPR011990 GO:0005515
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Tpr3g3030 729 SUPERFAMILY HCP-like 103 337 - -
Tpr3g3030 729 Pfam PPR repeat 653 678 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 616 641 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 203 229 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 99 125 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 523 540 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 299 331 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat 334 361 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 369 436 IPR011990 GO:0005515
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 192 263 IPR011990 GO:0005515
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat family 369 417 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat family 475 522 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat family 232 280 IPR002885 -
Tpr3g3030 729 Pfam PPR repeat family 127 176 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Tpr3g3030 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 436 IPR002885 -
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 62 191 IPR011990 GO:0005515
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 264 368 IPR011990 GO:0005515
Tpr3g3030 729 Gene3D Tetratricopeptide repeat domain 592 726 IPR011990 GO:0005515
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 165 199 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 406 433 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 371 405 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 203 234 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 478 512 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 99 129 IPR002885 -
Tpr3g3030 729 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3030 Tpr-Chr3 32730145 32734789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3030 217 685 Glycosyltransferase AT1G05670 23.467 1.80e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3030 - - lang:109340115 818.535